| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3982 |
|---|
| Symbol | |
|---|
| ID | 3518479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4178133 |
|---|
| End bp | 4178849 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286428 |
|---|
| Product | DNA-binding response regulator |
|---|
| Protein accession | YP_270640 |
|---|
| Protein GI | 71278729 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.319576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA GAATTGCCAT TGTAGAAGAT GAAGCTGCTA TTAGAGAAAA CTATGCTGAT
GTATTACGTA GCCAAGGCTA TCAAGTGCAA ACCTATGCAG ATAGATCTAG CGCTACCCAA
GCTTTTAATT TGCGTTTACC CAACCTAGTC ATTTTAGACA TAGGTCTGAA TGATGAATAT
GATGGTGGTT TTGTTTTGTG TCAGCAACTT AGGGCTAAGT CGGCTACCTT ACCTATTATA
TTTTTAACGG CACGTGATAA TGATTTTGAT ACGGTATCTG GTTTACGAAT CGGTGCCGAT
GATTACCTTA CCAAAGATAT TAGTTTACCT CACCTAACGG CGCGAATATC AGCATTGTTT
CGTCGCCAAG AAGCACTAAA AAAACCCATT AACGATGACC ATATTACTCG TTCTGGGGCG
CTTACGGTGG ATAGCCAGCG TATGAGTATT ACCTGGCAAA ATAGCTCTAT TGATTTAACT
ATTACTGAAT TTTGGTTAGT TCATGCCTTA GCCAAAAATC CTGGTCATGT TAAAAACCGT
ACCCAGTTGA TGACTGATTC AAAAATATAT GTGGATGACA GTACCATCAC TTCTCATATC
AAGCGAATTC GCAAAAAATT TATGTTACAC GACAACAATT TTGACTGCAT AGAAACCGTT
TATGGCATGG GTTATCGCTG GTTAAGTACT AATAGTATTG CTGATGAAGA AGGCTAA
|
|---|
| Protein sequence | MSKRIAIVED EAAIRENYAD VLRSQGYQVQ TYADRSSATQ AFNLRLPNLV ILDIGLNDEY
DGGFVLCQQL RAKSATLPII FLTARDNDFD TVSGLRIGAD DYLTKDISLP HLTARISALF
RRQEALKKPI NDDHITRSGA LTVDSQRMSI TWQNSSIDLT ITEFWLVHAL AKNPGHVKNR
TQLMTDSKIY VDDSTITSHI KRIRKKFMLH DNNFDCIETV YGMGYRWLST NSIADEEG
|
|---|
| |