| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3959 |
|---|
| Symbol | |
|---|
| ID | 3518466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4146285 |
|---|
| End bp | 4146842 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286405 |
|---|
| Product | sigma-70 family RNA polymerase sigma factor |
|---|
| Protein accession | YP_270617 |
|---|
| Protein GI | 71278716 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.925362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTGGT TAGTTATGAC TGATTTTTTA AAAAATATTG AACAGGCTTC TTCTGATGAA
AAGAGAGTGG CCCAAGTCAA ATTGCTGTAT CAAGATCATC ATCTACGCTT GATTCACCGT
GTTATGGCAA AAGGTTTAGC TAAACGTGAG GCCGAAGATG TAGTTCAAGA AGCTTTTGTT
AAATTACTTG GACTCGATAA CCAAGAAATA AGCAGTTATA TCCAAGCTTA CCTTTATCGT
ATTGCCTTAA ATCTGGCTAT TGATAAGCTC AGGTCTAACG CAAGAAGTCC GTTGGAGTCA
ATGCATGAAC AAGAAGATTA TAGTGACGAA AGTACCTCGC CCGAGCGGAA GAATGAATCT
CAACAGCTTT TGCGTAAAAT GTCAGAGTCA ATCAAAACGC TACCTCTTAA GTGTCGACAA
GCTTTTATTT TATATAAAAT AAAAGGCATG TCTTATGCGG ATATTGCTAG CACCTTGGAA
GTATCAGAGA GTATGGTACG AAAATATGTC CTAAGAGCAG TCAGACACTG CTTTGATGAA
CTCAAGTCAG ATTTGTAA
|
|---|
| Protein sequence | MLWLVMTDFL KNIEQASSDE KRVAQVKLLY QDHHLRLIHR VMAKGLAKRE AEDVVQEAFV
KLLGLDNQEI SSYIQAYLYR IALNLAIDKL RSNARSPLES MHEQEDYSDE STSPERKNES
QQLLRKMSES IKTLPLKCRQ AFILYKIKGM SYADIASTLE VSESMVRKYV LRAVRHCFDE
LKSDL
|
|---|
| |