Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3950 |
Symbol | |
ID | 3523052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4132461 |
End bp | 4134161 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637286396 |
Product | response regulator/GGDEF domain-containing protein |
Protein accession | YP_270608 |
Protein GI | 71282577 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAACACA TGAAAGTATT AATTGTTGAT GATGATATCG TTGACAGAGA GCTCATAAAA AGAACGTTAA AACGAAGTGA TATTAGTTGT AATATTACTG AAGTTGAATC CGTGGATGAT GCTCTGAAGA ATCTACAAGA CTCTTCTTTC GATGCGATAT TGCTCGATTA TAACTTACCG CAACGAAACG GGATTGAGTT ACTTTTAGAA ATAAAAGGCG ATCCAAATAG GCATGATACT GCTGTAATAA TGATGAGCAC ATCAAAAGAA GATGAGTTAG CACTTAATTG TATTAATGCA GGAGCCCAAG ATTTTCTGGT TAAAACTGAG ATAAACGTCT TTCGATTACA AAGGGCGATA GTCAATGCAC AAGCACGCTC AGACTTGGAA AAAAGACTAT ATCAAAGTTA CCAGCGTACT AAAGAACTTG CAGAGCATGA TAGCTTAACC GGTCTAGCCA ACCGTTATTA TTTTGATGAA TCCTTAGTAA AAGATATTAA GAGTAACCAA AGAGAAAAGA AAATCCTCGC ATTGTTATTA ATAGACTTGG ATAATTTTAA ATATGTAAAT GATAACTTTG GTCATGATAT TGGTGATAAA TTGTTAATTG AGGTGGTTAA ACGCATAAGT AACTGTTTAC GTGGTAATGA ATTATTTGCG CGTTTAGGTG GAGATGAATT CGCCATTACA TTAACGCGTC TACCATCCAT TAATGGAGCT AGTATTGTTT CTCAGCGCAT TATCAATGCG TTACGTGAAC CTTTTCAAAT CGATAATCAT TGGATTCAAT CGGGTGCCAG TATCGGCATT TCCACATGTC CGTGGGACAG TTCAAATACT AAGGAATTGT TTAAATTCGC TGATATTGCA ATGTATCGAG CTAAGAATAA AGGCCGCAAT CAATTTTCAT TCTTTGAAGA AGAAATGCAA AATGAGTTTC TAGAGCAATT TAAGATTGAA ACTCAACTAA GATCAGCAAT AATGAATGAC GACTTTTATT TACACTATCA ACCAGTCATA GATGCTAAAA GTAAAACAAT AACAGGGGTG GAGGCACTAA TTCGATGGAA TATCGACGGT GATATGATCA GCCCAGACAA GTTCATCCCG ATTGCTGAAA AGTCTCGACT CATTATTGAT ATTGGTAAAT GGGTAATACA ACAAGCAATA AAACAGCTTA GCCTTTGGAA CAAAAATCGA AGCTCGCCAC TAACCATGGC AATTAATTTT TCTTCAGTGC AGCTAGCGGA TGAATATTTA TTTGATTTTA TTCGCGACTG TTTAAGTCAG CATAATGTTG CTGCTCATTT AATTGAAGTG GAATTGACTG AAACAGCTTT AATTATTGAG CCAGAAAAGA CAGTTAAAAT TATTCAAGGA ATAAGTGACT TAGGCTGTAA AGTCTCACTT GACGACTTTG GCACTGGCTT TTCATCTTTA TCACACTTAC ATAGCTTTCC AATTAATATT GTTAAAATAG ATAGAACATT GATGCCGAAT GCTTCTTCGT CAGAAAAAGT TAAGCAGCTA TTAAGCGGTT TAGTTCTTAT GATCAAGTCG CTAGATTTAC AGATTGTTGC TGAAGGCGTT GAAACAGAAA GTGACTTAAA TTTATGTGTG AAACTGGGTA TAGGTAAAAT CCAAGGTTTT TATTTTGATA AGCCTTTATC TCCTTTTGAT TTAGAAAGAA AATATTTATA A
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Protein sequence | MQHMKVLIVD DDIVDRELIK RTLKRSDISC NITEVESVDD ALKNLQDSSF DAILLDYNLP QRNGIELLLE IKGDPNRHDT AVIMMSTSKE DELALNCINA GAQDFLVKTE INVFRLQRAI VNAQARSDLE KRLYQSYQRT KELAEHDSLT GLANRYYFDE SLVKDIKSNQ REKKILALLL IDLDNFKYVN DNFGHDIGDK LLIEVVKRIS NCLRGNELFA RLGGDEFAIT LTRLPSINGA SIVSQRIINA LREPFQIDNH WIQSGASIGI STCPWDSSNT KELFKFADIA MYRAKNKGRN QFSFFEEEMQ NEFLEQFKIE TQLRSAIMND DFYLHYQPVI DAKSKTITGV EALIRWNIDG DMISPDKFIP IAEKSRLIID IGKWVIQQAI KQLSLWNKNR SSPLTMAINF SSVQLADEYL FDFIRDCLSQ HNVAAHLIEV ELTETALIIE PEKTVKIIQG ISDLGCKVSL DDFGTGFSSL SHLHSFPINI VKIDRTLMPN ASSSEKVKQL LSGLVLMIKS LDLQIVAEGV ETESDLNLCV KLGIGKIQGF YFDKPLSPFD LERKYL
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