| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3927 |
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| Symbol | |
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| ID | 3520870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4106962 |
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| End bp | 4108140 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286373 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_270585 |
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| Protein GI | 71280404 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAATA AGTCTGTGTC TACAGCACCT GCAAGTACTC CGACTCTCAT CAGCCGTTTA
CCCCTATTTA TTATCGTTGC CATCCTAGTG GCCTTAATTA CTTATTTGCA ATGGCCAGAA
GCTAAGCAAG AAAAAAGTAC ATTCAAGCGT GTCGTTGCGG TAAAAATGGT GCCGGTATTA
CTTGCCGAAT TTATTGAAAG CGTTGAAGCC GTGGGTACAG CGAGAGCCAA TGAGCAAGTT
GTTATTACCA GTAAATATTC AGACCTTGTT GATGAGATTT ACTTTGATGA TGGTGAGCGA
GTTAAGAAAG GCGCTAAGTT AGTTAAGTTG AATAACCAAG AAGAGCTAGC AAAGGTTAAC
GAATTAAAAG CCAATTTGTC AGAGTCACAG GCGCATTTAA AACGACTATC TGAGTTACTC
GCCAGTCGAG CTACTTCAAA ATCTTTAGTC GAGCAACAAG AAGCAAAAAC CAAGGCGATT
GAAGCACAAC TCGTTAGTGC ACGCGCTAAA TTAAATGACT TAACTATTCG TGCCCCATTT
GCTGGCGTAT TGGGTTTTCG TGAGGCGAGT AAAGGTGCTT ATATTGATGC CGGTGATGTC
ATTACTAGTT TAGATGATTT GAGTATTATC AAAGTTGATT TTCACTTACC TGAGCGTTTA
CTAACCCATA TTCATGTTGG ACAACAAGTG AGTGCGGTAA ACAGCGCTTA TAAAGATAAA
GAATTCATCG GTAAAATAAC GGCCATTGAT AGCCGAATTG ATTCAAGTAC GCGAAGTATT
AAAGTGCGCG CCACTATCAG TAATAAAGCA TTAAAACTTC ACCCAGGCAT GTTGCTCAAT
ATTAGTGTGT TATTACAAGT AGAGAATATA TTACAGTTAC CTGAAAGCAG TATTATTCCT
ATTGAAGATA TCCATTATGT CTTTGTTGAA AAGGAAGGGA AAGCGATACG AAAAGCAATC
AAAATTGGTC GACGTCATCC TGGTGTAGTA GAGGTTTTAT CAGGCTTAGT TGAAGGCGAA
CATGTGGTTG TTGAAGGGGC ACTTAAACTG CGAGATGGCT CTGCTGTCAG TATCATTGGT
CAAGTTGCTG AAGTTGAGGC TGAGGCTGGA GATAAGGCAA GCAAGTCAGC TAAGGAAAAG
GCCAACAAAA CTCCCGCTGA AAACGGGAGC AAAACCTAG
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| Protein sequence | MPNKSVSTAP ASTPTLISRL PLFIIVAILV ALITYLQWPE AKQEKSTFKR VVAVKMVPVL
LAEFIESVEA VGTARANEQV VITSKYSDLV DEIYFDDGER VKKGAKLVKL NNQEELAKVN
ELKANLSESQ AHLKRLSELL ASRATSKSLV EQQEAKTKAI EAQLVSARAK LNDLTIRAPF
AGVLGFREAS KGAYIDAGDV ITSLDDLSII KVDFHLPERL LTHIHVGQQV SAVNSAYKDK
EFIGKITAID SRIDSSTRSI KVRATISNKA LKLHPGMLLN ISVLLQVENI LQLPESSIIP
IEDIHYVFVE KEGKAIRKAI KIGRRHPGVV EVLSGLVEGE HVVVEGALKL RDGSAVSIIG
QVAEVEAEAG DKASKSAKEK ANKTPAENGS KT
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