| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3926 |
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| Symbol | |
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| ID | 3521822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4103873 |
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| End bp | 4106962 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286372 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_270584 |
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| Protein GI | 71281350 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.831264 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCCTTT CTGACTTATC GGTTAAAAGA CCTGTTTTTG CTACGGTATT AAACTTACTT
ATTATAACTT TTGGCATTGT TGCTTTTTTA ATGTTGCCGT TACGCGAATA TCCGGATATT
GATCCGCCTA TTGTTAATAT TAGTACCACA TACCCGGGGG CTTCTGCTGC CATTGTTGAA
ACCAAAATCA CTCAATTACT TGAAGATAGA ATTAGCGGTA TTGAGGGGGT TAAAACCATC
AACTCTAATA GTCGTGTTGG TCGTTCAAGT ATTACCATTG AGTTTAATTT AGATCGCGAT
ATTGATGCCG CGACAAATGA TGTGCGTGAT CGTATCTCTC GTGCATTAAA TAATCTACCA
GAGCAATCTG ATCCTCCTGA AGTATCAAAA GCCAATGACG ATGAAAGCGT GATTGTGTGG
TTCGTTTTAC AAAGTGAAAC CATGAGCACC TTAGCGCTTA CCGATTACGC TAATCGTTAC
ATCGTTGACC GTTTTGCCGT GGTTGATGGC GTTGCCCGTG TTCGTGTTGG CGGCGGTCGT
ACCTATGCCA TGAAGATTCG CTTGAATCGT GCTTCTATGG CTGCGCGTGA TATTACCGTA
CAAGATATTG AAAGTACCTT ACGTGACGAG AATGTTGAGC TACCCGCAGG GCGTATAGAG
TCAATAGACA GAGATTTCTC TATTCGCGTT GAGCGTAGCT ACTTAACCGA GCAAGACTTT
GCCAATATGG TGATTAATCA CTCTGAGAGT AAGTCAGTTG TGCGATTAGG TGATGTTGCT
GAAGTATTCA TTGGTGCACA AGATGATGAA AATATGTTCC GCGGCAATGG TAAAAATATG
GTGGGCTTGG GGGTAATAAA ACAGTCTAAA GCCAATACCT TGGACGTGGT TAAAACGGCT
AGGAAAGAAA TGATCGCTAT TCGTGATTCA CTTCCTGTGG GAACAACCAT CACCAATAGT
TATGATAGCT CTGTGTTTAT TCAAGGCTCT ATCGATGAAG TGTATAACAC CTTAATTATT
GCCATGGTTA TGGTGGTCTT AGTAATCTTT TTATTCTTAG GTAACGTTCG CGCTACGTTA
ATTCCTGCGG TTACGGTACC TGTTGCCTTA ATTGGTTCAA TGATGGCGCT ATCTTGGTTT
GGTTTTTCCA TTAACTTACT TACATTATTG GCTTTAGTGC TCGCTATTGG TCTTGTTGTT
GATGATGCCA TTGTCGTACT TGAAAATATT TACCGTCGTA TTGAAAATGG TCAAGCGCCA
TTAATGGCTG CATACGAAGG GGGGAGGGAA GTCGCTTTTG CGGTTATTGC TACCACATTA
GTATTGGTTG CTGTGTTTGT GCCACTGGTC TTTCTCTCTG GCAATATGGG GCGTTTGTTT
ACCGAATTTG CCATTGCTAT CGCTGCAGCC GTTGTTTTTT CAAGTCTTAC CGCTTTATCA
CTTACGCCCA TGATGTGCTC AAAAATGTTA AAGCATAGAG AGCGAAGCTC TTCATTTGGA
CAAAAGCTTG ATCGCGCTTT TGCTCGCTTT GAAGCCGCTT ATGGCCGTGC ATTAGCCAGT
AGTATTCATC AGCCATTATT AATTGTACTT GTGCTGGGCT TATCATTAGC TGCAGTATTT
TTGTTGTTTA ATAAATTACC TTCTGAATAT ACGCCTAAAG AAGACAGGGG GAATTTCTTC
TTAATTATGC AAGGCGCTGA AGGGGCTAGT TATGAAAGTA ACGTAAAGAA TATGCATAAG
ATTGAAGAGA AGCTTTTAGG TTATCAAGCT GAGGGGGAAT TAGACCGTGT GTTAGTACGT
GTTCCTGGTT TTGGTGGCAG TGGTGGTATT GCTATTGTTG GTCTACCTGA GTGGGATAAA
CGAAGTATTG ATACCTTTAG TTTTATTAAC AAAATAAATC GTGATGTGCA AAATGTTACT
GATGTACGTG CTTTTGCTAT TATGCGCCGT GGCATTGGTG GCGGCGGTGG TAGTAATGCG
CCAGTGTCTT TTGTTCTTCA AGGGAATACC TTTGCAGAGC TGGCTCAGTG GCGTGATATT
TTGATCACGG AAGCGCAAAA GAACCCTAAC TTGTCGAATA TTAATAGTGA TTATAAAGAA
ACGTATCCTC AGTTATTAGT ACAAATAGAT CGTGAACGTG CCTATGATTT AGGTGTGCCA
GTAGGAGACA TAGCACAAAC GTTAGAGACT ATGTTAGGTC AACGTCGCGT TACTTCCTTT
GTTGATCGTG GTGAAGAATA TGATGTAATT GTTGAGGGGG ATGAAAAACA ATTTCAAAGC
CCGACTGATA TCGATAATCT TTATGTACGT TCTCGAACCA CGGAAAAACT AATTCCACTC
GCTAACTTAC TTACTATTGC TGAGAATGCG ACTTCATCGA GGCTCAACCG TTATAATCGC
TTACGTAGTA TCACTGTTAC TGCGAACTTA GCCGACGGTT ATGCCTTAGG TGATGCATTA
GATTTTCTAG TTGAAGTAAC TAAAAATAAA CTGCCAGAGC ATGTACAAGT TGATTATAAA
GGTGAGTCTT TATTATTAAA AGAGTCAGGT AATTCTATCT TGTTTGTTTT CTTGCTTGCG
CTATTAATTA CTTATTTGGT GTTAGCTGCG CAGTTCGAAA GTTTTATTCA TCCTTTTGTT
ATATTACTTA CCGTTCCACT GGCGCTGGTA GGAGCCCTTG CTGGGTTAGA ACTTATGGGC
ATGAGCTTAA ATATCTATAG TCAAATTGGC ATTGTTATGT TGATTGGTTT AGCGGCAAAA
AATGGTATTT TAATTGTTGA GTTTGCTAAC CAGTTACGTG ATAGAGGTAT TGCTTTTGAA
GAGGCGTTAA TCAGTGCCGC GCAGCAAAGA CTGCGTCCAA TTGTCATGAC TACTTTTACC
ACAGTAACCA GTGCAATACC TTTAGTGTTA GCCGTTGGGC CTGGTGCTGA AAGTCGTATG
GTTATCGGTG TGGTTATTTT TGCTGGCGTA TCATTAGCAA GTATATTTAC CTTGTTCATT
GTGCCGGGTG CATATTATTG GTTATGTCGT AATACCGGCT CACCGCAAGC TATTGCCAAT
GAAATTGAAA AGGCTAAGCA ACTAGGATAA
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| Protein sequence | MILSDLSVKR PVFATVLNLL IITFGIVAFL MLPLREYPDI DPPIVNISTT YPGASAAIVE
TKITQLLEDR ISGIEGVKTI NSNSRVGRSS ITIEFNLDRD IDAATNDVRD RISRALNNLP
EQSDPPEVSK ANDDESVIVW FVLQSETMST LALTDYANRY IVDRFAVVDG VARVRVGGGR
TYAMKIRLNR ASMAARDITV QDIESTLRDE NVELPAGRIE SIDRDFSIRV ERSYLTEQDF
ANMVINHSES KSVVRLGDVA EVFIGAQDDE NMFRGNGKNM VGLGVIKQSK ANTLDVVKTA
RKEMIAIRDS LPVGTTITNS YDSSVFIQGS IDEVYNTLII AMVMVVLVIF LFLGNVRATL
IPAVTVPVAL IGSMMALSWF GFSINLLTLL ALVLAIGLVV DDAIVVLENI YRRIENGQAP
LMAAYEGGRE VAFAVIATTL VLVAVFVPLV FLSGNMGRLF TEFAIAIAAA VVFSSLTALS
LTPMMCSKML KHRERSSSFG QKLDRAFARF EAAYGRALAS SIHQPLLIVL VLGLSLAAVF
LLFNKLPSEY TPKEDRGNFF LIMQGAEGAS YESNVKNMHK IEEKLLGYQA EGELDRVLVR
VPGFGGSGGI AIVGLPEWDK RSIDTFSFIN KINRDVQNVT DVRAFAIMRR GIGGGGGSNA
PVSFVLQGNT FAELAQWRDI LITEAQKNPN LSNINSDYKE TYPQLLVQID RERAYDLGVP
VGDIAQTLET MLGQRRVTSF VDRGEEYDVI VEGDEKQFQS PTDIDNLYVR SRTTEKLIPL
ANLLTIAENA TSSRLNRYNR LRSITVTANL ADGYALGDAL DFLVEVTKNK LPEHVQVDYK
GESLLLKESG NSILFVFLLA LLITYLVLAA QFESFIHPFV ILLTVPLALV GALAGLELMG
MSLNIYSQIG IVMLIGLAAK NGILIVEFAN QLRDRGIAFE EALISAAQQR LRPIVMTTFT
TVTSAIPLVL AVGPGAESRM VIGVVIFAGV SLASIFTLFI VPGAYYWLCR NTGSPQAIAN
EIEKAKQLG
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