Gene CPS_3886 details

Gene Information

• Locus tag: CPS_3886
• ID: 3520331
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 4058349
• End bp: 4060292
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637286332
• Product: ATP-dependent helicase
• Protein accession: YP_270548
• Protein GI: 71279869
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGAAA ACAACGTTAG CCAAGTTAGC CAAGCATTTT CTCCAGAAGG CGCTTTGGCT 
AAAGCCATCA AAGGCTTCTC GCCACGTCAA GCGCAAACCG ATATGGCACT TGATGTTGCC 
CATGCAATAG ACAAACAATC ATCGCTTATT GTTGAAGCAG GAACCGGTAC CGGAAAAACC 
TTTGCTTATT TGATCCCTGC CTTTTTATCG TTAAACCCGA AAAATCCTAA AAAAATAGTA 
GTCTCTACGG GTACTAAGAA CTTGCAAGAG CAACTCTTTC ATAAAGATAT TCCCCTAATT 
AAAAAGGCGC TAGCGAGTAA TGCGCAAGTC GCTTTATTAA AAGGTCGCGC AAACTATTTA 
TGTAACTATC GGTTAGCGCA GTATCAAGAT AGTAGAGGTC AACTTGATGC TCAAATGTTG 
CAAGATCTAG TTAAAGTGAA AACCTGGGCA AATGGCACGC AAAGTGGCGA TATTGGCGAA 
TTAGTGAATG TCAGTGAAGA CTCCAGTATT TTTCCTTTTG TAACGAGTAC CTTGGATAAT 
TGTTTGGCAA GAGATTGCCC AGACTATGAA GCATGCCACT TAGTTCGAGC CCGTCAAAAA 
GCAAGTGATG CTGATATTAT TGTGGTGAAT CATCATTTGT TTTTTGCTGA TATGGCCTTA 
AAAGATACTG GTTTTGGTGA GCTTATACCT AAGGCTCAAG TGATGATTTT TGATGAAGCG 
CATCAAATTG GGGATATCGC GAGTGAATAT TTTGGCGAGG CATTTTCTAG CAAGCAACTC 
GTTGATTTAT GTACCGACGT ATTACAAGTA CACCGTAGTA GTTTAACTGA TGTTAAACAG 
TTAGGTTTAG CAGCCGAAAA ACTACAAAAG ACTTGCCAAG AGTTTCGCCT GTTATTTAAT 
TATGATCCGG AACGTGGCAA TTGGCGGGAA AAGTATAAAC AAGTTCAATT TCAGCAAAAA 
TTCGCTAACC TAAAAATTGA TTTAGATTTT CTATATCAAG TGATAAAACT GTGTGTTTCA 
AGAAATGAAG CGATAGATAA TTGCTTTGAC CGTGCTGTTA ATTTACTTGC TCAATACGAC 
GTGATGGCAA ATGTTGAAGC ATACGGCATG AGCTTTTGGT ATGAAACCAC TCCGCGGAGC 
GTGGTATTGC ATCAAACCCC TTTAAACGTT AGTGAAAAGT TTAATACCTT TGTGAAAGAG 
TCGGGTGCCG GTTGGATTTT TACCTCAGCA ACATTAGCTG TAGATAATAG CTTTAATCAT 
TTTGCTAAAC ACTTAGGTTT ACAAGATGCT AAACAGTTAT TACTTGATAG CCCGTTTGAT 
TACCAAGCGC AATCGCAGCT TGTTGTACCG CGTTATTTAC CGCAGGCCAA TGATAAAAAT 
CGCGCCTTAA AGTTAGCTGA GTTGGCAGAG CCGTTGATTA AAGCCAGTAA AGGTGCCTGC 
TTTATGCTTT TTACTAGTTA TCGTGTAATG CACCAGGTTG CTGAAGTTCT AGCTGAGAGT 
ATTGATAACC CCTTATTAGT GCAAGGTAAA ATGGCTAAGC GAAAACTGCT TGAGCAGTTC 
GTCGAACAAG ATGATGCGGT ACTGCTAGCT ACGGCAAGTT TTTGGGAAGG TATTGATGTT 
CGTGGTGATA AGCTCACTTG CGTGATTATT GATAAGTTAC CTTTTGCTTC ACCGGACGAC 
CCTCTGTTGC AAGCTCGGTG TGAAGATGTA AGACGTCAAG GCGGAGAGCC CTTTAGTCAA 
ATTCAATTAC CTCAAGCGGT TATCGCGTTA AAGCAAGGGG TAGGGCGACT TATTCGTGAT 
GTTAGTGATC GTGGTGTGCT AGTGATTTGT GATGATAGGT TAGTGAATAA ACCTTATGGT 
GAAACTTTTT TGAAAAGTTT GCCTGATATG AAACGTAGCC GAGATATTAA TAAAGCTGCA 
AAGTTTTTGG AAACCTTATC CTAG 

 

Protein sequence

MTENNVSQVS QAFSPEGALA KAIKGFSPRQ AQTDMALDVA HAIDKQSSLI VEAGTGTGKT 
FAYLIPAFLS LNPKNPKKIV VSTGTKNLQE QLFHKDIPLI KKALASNAQV ALLKGRANYL 
CNYRLAQYQD SRGQLDAQML QDLVKVKTWA NGTQSGDIGE LVNVSEDSSI FPFVTSTLDN 
CLARDCPDYE ACHLVRARQK ASDADIIVVN HHLFFADMAL KDTGFGELIP KAQVMIFDEA 
HQIGDIASEY FGEAFSSKQL VDLCTDVLQV HRSSLTDVKQ LGLAAEKLQK TCQEFRLLFN 
YDPERGNWRE KYKQVQFQQK FANLKIDLDF LYQVIKLCVS RNEAIDNCFD RAVNLLAQYD 
VMANVEAYGM SFWYETTPRS VVLHQTPLNV SEKFNTFVKE SGAGWIFTSA TLAVDNSFNH 
FAKHLGLQDA KQLLLDSPFD YQAQSQLVVP RYLPQANDKN RALKLAELAE PLIKASKGAC 
FMLFTSYRVM HQVAEVLAES IDNPLLVQGK MAKRKLLEQF VEQDDAVLLA TASFWEGIDV 
RGDKLTCVII DKLPFASPDD PLLQARCEDV RRQGGEPFSQ IQLPQAVIAL KQGVGRLIRD 
VSDRGVLVIC DDRLVNKPYG ETFLKSLPDM KRSRDINKAA KFLETLS