Gene CPS_3872 details

Gene Information

• Locus tag: CPS_3872
• Symbol: tkt
• ID: 3523056
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 4043798
• End bp: 4045786
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637286318
• Product: transketolase
• Protein accession: YP_270534
• Protein GI: 71282581
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATCGC GTCAAGAGTT AGCAAATGCT ATCCGTGTAT TAAGTATGGA TGCCGTACAA 
AAAGCAAAAT CAGGGCACCC TGGTGCACCT ATGGGTATGG CCGATATCGC AGAGGTATTA 
TGGCGTGATT TTTTAAAGCA TAATCCAACT GACCCAAACT GGGCCGACCG TGATCGCTTT 
ATTTTATCAA ACGGCCATGG CTCAATGCTT ATCTATTCAC TATTGCATTT ATCGGGTTAT 
GATTTATCTA TTGAAGATTT GAAAGAATTC CGTCAATTGC ATTCAAAAAC CCCAGGTCAT 
CCTGAATACG GTTACACACC AGGTGTTGAA ACAACGACGG GTCCATTAGG TGCTGGTATT 
GCCAATGCCG TGGGTATGGC TATTGCTGAA AAAACGTTAG CAGCACAGTT TAACCGTGAA 
GATCATGCGA TTGTTGACCA TTTCACTTAT TGCTTCTTAG GCGATGGTTG TTTAATGGAA 
GGTATCTCTC ATGAGTCTTG TTCACTAGCC GGAACTTTAG GTCTAGGTAA ACTTATCGCT 
TTTTGGGATG ACAATGGCAT TTCAATCGAT GGTAAAGTTG AAGGTTGGTT TACTGACAAT 
ACCCCTGCTC GTTTTGAATC TTACGGCTGG CATGTTATTT GTGTTGATGG TCATGACCCT 
CAAGCAATTA CTCACGCTAT CGAAGAAGCT AAATCAGTCA TTGATAAGCC AAGTATGATT 
TGTTGTAAAA CTATCATTGG TTTTGGCTCA CCAAATAAGT CAGGTACTCA TGACTGTCAC 
GGCGCACCAT TAGGTGATGA CGAAATTGCC GCAACACGTG AATTTTTAAA CTGGTCACAT 
GCTCCATTTG ATATTCCAAG TGACATATAT GAGCAATGGG ATAGAAAAGA AAAAGGTCAA 
GCGAGCCAAG TGAGCTGGAA TGACAAATTT GCCGCTTATA AAGCAGCACA CCCTGGTCTT 
GCAAGCGAAT ATGAACGTCG TGTGATTAAA GGTGAATTAC CTGCTGAATT TGAAGAAAAA 
GCAAATGCTT TCATTCAACA GTGTCACGAA AGCAGTGAAA ACATTGCTTC ACGTAAAGCA 
TCACAAAATG CGATTGAAGC TTTTGGTAGC GTTTTACCTG AAATGTTAGG TGGCTCTGCC 
GATTTAGCTG GCTCAAACCT AACGTTATGG TCTGGCTCTA AAGGTATTCA AGAAGATGCT 
GCTGGTAACT ATATCTTTTA CGGCGTACGT GAATTTGGTA TGAGTAGCAT AATGAATGGT 
ATTTCATTGC ACGGTGGTTT TGTTAACTAC GGTGCGACTT TCATGATGTT TATGGAATAT 
GCACGTAATG CGGTTCGTAT GTCGGCATTA ATGGGCATTC AAAATATCTT TGTTTATACC 
CATGACTCTA TTGGTCAAGG TGAAGATGGT CCAACGCATC AGCCTATTGA GCAGTTAACT 
AACTTAAGAA CTACACCAAA CTTAACGACT TGGCGTCCAT GTGATGCAAC AGAGTCTGCT 
GTTGCATGGA AAGCTGCTGT TCAAAGCCAA AAAGCGCCAA CAGCGTTAAT ATTTTCACGT 
CAAGGTTTAC CTGCAATGAG TCGTACTCAA ACGCAAGTAA GCGATATTGA AAAAGGCGCT 
TATATTTTAG TTGATTGTGC TGGCACACCT GATGTTATCT TAATGGCTAC AGGCTCTGAA 
GTTGCTTTGG CAGTTAATGC AGCAACAGCA TTAACTGAAC AAGGTAAACT AGTGCGTGTG 
GTTTCTATGC CTTCAACGAA TGTTTTTGAT AAGCAAAGCA GCGACTACAA AGAAGCTATA 
TTACCGTTTA GCGTAACTAA ACGTGTCGCT ATTGAAGCAG CACATGTTGA CTTCTGGGCT 
AAATATGTTG GTCTTAGTGG CGCAGTTGTT GGTATGACAA CATTTGGTGA ATCAGCTCCA 
GGTAATGTAT TACTTGAGCA CTTTGGTTTC ACTGTAGACA ATGTTGTAAA TACTGTAAAC 
AAGCTATAA 

 

Protein sequence

MSSRQELANA IRVLSMDAVQ KAKSGHPGAP MGMADIAEVL WRDFLKHNPT DPNWADRDRF 
ILSNGHGSML IYSLLHLSGY DLSIEDLKEF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI 
ANAVGMAIAE KTLAAQFNRE DHAIVDHFTY CFLGDGCLME GISHESCSLA GTLGLGKLIA 
FWDDNGISID GKVEGWFTDN TPARFESYGW HVICVDGHDP QAITHAIEEA KSVIDKPSMI 
CCKTIIGFGS PNKSGTHDCH GAPLGDDEIA ATREFLNWSH APFDIPSDIY EQWDRKEKGQ 
ASQVSWNDKF AAYKAAHPGL ASEYERRVIK GELPAEFEEK ANAFIQQCHE SSENIASRKA 
SQNAIEAFGS VLPEMLGGSA DLAGSNLTLW SGSKGIQEDA AGNYIFYGVR EFGMSSIMNG 
ISLHGGFVNY GATFMMFMEY ARNAVRMSAL MGIQNIFVYT HDSIGQGEDG PTHQPIEQLT 
NLRTTPNLTT WRPCDATESA VAWKAAVQSQ KAPTALIFSR QGLPAMSRTQ TQVSDIEKGA 
YILVDCAGTP DVILMATGSE VALAVNAATA LTEQGKLVRV VSMPSTNVFD KQSSDYKEAI 
LPFSVTKRVA IEAAHVDFWA KYVGLSGAVV GMTTFGESAP GNVLLEHFGF TVDNVVNTVN 
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