| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3839 |
|---|
| Symbol | |
|---|
| ID | 3520342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4004354 |
|---|
| End bp | 4006264 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637286285 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_270501 |
|---|
| Protein GI | 71279880 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.406017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TGCTTGGATT TAGAAGTGCT CTGATTGTAT CAATGAGTGG CTTAATCGTC
TTTTGTTTAT TAGTCTCCAA TTGGATGTCT TATAATGAAA TTCGAAATAA TACGGTTGAA
AACGTGAATG AAACATCCCA AGGCATGATT CGTTATGAAG CCGATAAAGT TGAAACATGG
TTTCAGTCTA AAGCTAAATT AATTGATGAA TTGGCTAATA ATTATGTTAA TGGCTCTTAT
CAAGATAATT TTGTTGGTAT TGCTAAATTA GCGCAAACTG CAGGTGATGT TACTGCAATA
TATATTGGTT TTGATGATGG TAGAGCATAT TCAACATCGG TTGGTGATGC GTGGGTTGAT
GGTGTTGCAA AACCTGAATT ATATGACCCA ACAAAGCGTC CTTGGTACAG TCAAGCTAAA
GCCAGTAATG TATTGGATAT AACAGCAGTT TACCCTGATG CAACTACAGG GAATGATGTT
GTTTCAATTA TTAAAGTGAT GAATGATGGT GTCGCTTTAG CAGATATTGA ACTTACTATT
TTAGGTGATA CTGTCAAAGG CATTAACCAG CCGGGTGCGA TATCAGTTAT TACTGATGAA
GAAGGAAATG TACTGGCTTC GACTTCTAAG ATTGTGGTCG TGGGAACACC TTTTCGTAAT
GCGGGCATGG CAGAGCTTGA AAGAGAAATG CTGTCACAAG ATGAAATGAT GAAAGACTAT
ACCTTGAATG GTGTAGATAA AATTGCCTTT ACTAAATCAA TAGAGCTGGT TAATGGTAAA
AAATGGTACT TGTTCGTTGG TATTGATAAA TCGGTTGCTT ATGCTTCTTT AGACACCGCG
CTTAATCAAG CCGTGATCTC TTCTATTGTA ATGATTATTA TTGGAATTGC AGTACTGCTA
CTGGTTTTAC AAGCGCTGTA CCGACCTATT TTATTGCTTA AAGAAATGGT TCATGACTTG
TCTAAAGGTA ATGGTGACTT AACGTCTCGC TTACCTGTGA AGAATAATGA TGACCTAGGT
CTTATTTCTG AAAATATAAA TTTATTTATT GAAAAACTAC AACGACTAAT GCTTGATGTT
TCGCAATCGA GTACAGAAAT TGACGTTAGT ATAAAAAAAC TTAGAGATGA AGTTGATTCA
AATGGCACCA TTCTCAATGC ACACATGATT GAAACTGATC AAATCGTTTC CGCTATCGAA
GAGATGAGTG TTACCGCAAA AGATGTTGCT CAAAATAGTA ATGATACAGC AGCGTTTACG
CAAACAACCA ATACTCAGGC ATTGAAATCT AAAGAATCGG TTGGAGAAGC CACAGCAATC
GTTGCAAGGT TAGTTAACGA AGTTGAAAAT ACGGCTAACA GCATTTCAGA AATTGAACGA
AATACCTCTG ATATCAATAA TGTATTGAAA GTCATTGGAG ATATTGCTGA TCAAACAAAT
TTATTAGCGT TAAATGCAGC CATTGAAGCC GCGCGAGCGG GTGAATATGG CAGAGGTTTT
GCAGTGGTTG CTGATGAGGT TAGAGCTCTT GCTGCTAAGA CTCAAGACAG TACAACAGAA
ATTGAGCATA CCCTTTTACA ATTGCGAGAA GGCTCTAGTT CTGCCATTTC TACCATGGGC
TCAACTAAAT CCACCTGTTT AGAAGTTGCT AAATCAACAG AAGTGGTTGC GGGGGATTTA
GGCTCAATTA ATGAATCTGT AAGCCAAATA AACGATTTAA ATCTACAAAT TGCTACGGCG
GCGGAAGAGC AAAGTTGTGT CTCTGATGAA ATAGCCCGAA ATATGACGGC AATTAGTGAT
ATGGCAAATG AACTCGTGGT AAATGGTAAT AATAGTCTTG ATCAAACGAT AGAGTTAGCC
AATGCCAATG TTAACTTGAA AGCGTTAGTT GCTCAGTTTA AATTAAGCTA A
|
|---|
| Protein sequence | MKKMLGFRSA LIVSMSGLIV FCLLVSNWMS YNEIRNNTVE NVNETSQGMI RYEADKVETW
FQSKAKLIDE LANNYVNGSY QDNFVGIAKL AQTAGDVTAI YIGFDDGRAY STSVGDAWVD
GVAKPELYDP TKRPWYSQAK ASNVLDITAV YPDATTGNDV VSIIKVMNDG VALADIELTI
LGDTVKGINQ PGAISVITDE EGNVLASTSK IVVVGTPFRN AGMAELEREM LSQDEMMKDY
TLNGVDKIAF TKSIELVNGK KWYLFVGIDK SVAYASLDTA LNQAVISSIV MIIIGIAVLL
LVLQALYRPI LLLKEMVHDL SKGNGDLTSR LPVKNNDDLG LISENINLFI EKLQRLMLDV
SQSSTEIDVS IKKLRDEVDS NGTILNAHMI ETDQIVSAIE EMSVTAKDVA QNSNDTAAFT
QTTNTQALKS KESVGEATAI VARLVNEVEN TANSISEIER NTSDINNVLK VIGDIADQTN
LLALNAAIEA ARAGEYGRGF AVVADEVRAL AAKTQDSTTE IEHTLLQLRE GSSSAISTMG
STKSTCLEVA KSTEVVAGDL GSINESVSQI NDLNLQIATA AEEQSCVSDE IARNMTAISD
MANELVVNGN NSLDQTIELA NANVNLKALV AQFKLS
|
|---|
| |