| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3794 |
|---|
| Symbol | lpxH |
|---|
| ID | 3522037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3956897 |
|---|
| End bp | 3957643 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286241 |
|---|
| Product | UDP-2,3-diacylglucosamine hydrolase |
|---|
| Protein accession | YP_270457 |
|---|
| Protein GI | 71281565 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2908] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01854] UDP-2,3-diacylglucosamine hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG ATAATAAAAC AGCAATAACT TATTTTATTG CTGATTTACA CCTTAGCGAA
AACAGGCCTG ATATCAGTGC CTGTTTTTTA CGATTTTTAG AAAGTGATGC CGTACAAGCT
GAAAAGCTTT ATATCCTAGG TGACTTATTT GAAGCTTGGG TTGGTGATGA TGATGATAGT
CCCTTCCTTA AAACTATCGC TGATGCACTC ACTAAGCTAA GCAAATCAGG GACAATGATT
TATTACATTC ATGGTAATAG AGATTTTCTA ATTGGTAAGC GTTATGCGAA ACAAGCAAGT
ATGCAGCTTC TCCCTGAAGT GGAGACTATT GACCTTTATG GTCGACATGT AGTCATTATG
CATGGTGATA CCTTATGTAC TCGCGATGTC GACTACCAAG TGTTTAGAAA AAAGTCTCGT
TCTTGGTGGT GGCAAGCAGC AATTAAAAGT CTACCGTTAT TTATACGCAA AAAGATAGCT
GCTGACTATA GAAAGAAAAG TGCTACTGCA ACGGCAGTGA AATCACAAGC GATCATGGAT
GTTACCGAAA GCGAGGTAAT TGAGTGTCTA CAAAAATATC GAAGCCAACT GTTAATTCAT
GGTCATACAC ACAGACCAGC TATCCATGAA ATTTCTGTAA ATGGTGATAA TGCTCAACGT
ATCGTCTTAG GCGATTGGTA TGAGCAAGGT GCTTGGTTAA AAGTAACTGC TAACTCTATT
CAATTACTCA ACCAATCGTT AACCTAA
|
|---|
| Protein sequence | MIEDNKTAIT YFIADLHLSE NRPDISACFL RFLESDAVQA EKLYILGDLF EAWVGDDDDS
PFLKTIADAL TKLSKSGTMI YYIHGNRDFL IGKRYAKQAS MQLLPEVETI DLYGRHVVIM
HGDTLCTRDV DYQVFRKKSR SWWWQAAIKS LPLFIRKKIA ADYRKKSATA TAVKSQAIMD
VTESEVIECL QKYRSQLLIH GHTHRPAIHE ISVNGDNAQR IVLGDWYEQG AWLKVTANSI
QLLNQSLT
|
|---|
| |