| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3778 |
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| Symbol | sapD |
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| ID | 3520587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3941964 |
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| End bp | 3942977 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286225 |
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| Product | peptide ABC transporter, ATP-binding protein |
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| Protein accession | YP_270445 |
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| Protein GI | 71280123 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAC TCGACATTCG AAATTTATCC ATTGAGCTTG ATACACCCAG CGGACGTGTA
TTAGCAGTAG ATAGGGTCAG TTTATCGATA AAAGAAGGTG AAGTACGCGG ATTAGTCGGA
GAATCTGGCT CAGGAAAGTC ACTGTTAGCG CAAGCTATTA TAGGTGTTTT AGAAGATAAG
TGGCATGTTC ATGCTGATCG ATTCCATTGG CGAGGAATCG ATTTATTGCG CCTATCCATA
GGTGAGCGTA GGGCCTTATT ATGTCGTGAT ATCGCGATGA TCTTCCAAGA ACCGATGAGC
TGCCTTGATC CCACAACGTT GATAGGTGAG CAGTTAAGTG AAGCCATTGA TACCTCGCAA
TTGTCTGGCT TCTTTTGGCA ACGCAAGAAA CAACGTAAAG AAGCGGTAAT AAAGTTACTG
CACAAAGTAG GTATTAAGAA GCATGTTCAA TGCATTAATA GCTACCCTCA TCAACTGACT
GAAGCAATTT GTCAACGTGT TATGATAGCA ATTGCGCTTG CGGGTAGACC TATTCTATTA
ATTGCCGATG AACCTACTGC AGCAATGGAA AGTACAACCC AAGGACAAAT ATTTAGGTTA
CTTGCTAATC TAAACCAATT AAAGAACATG TCTATCCTAT TAATTAGCCA TGACTTAGAA
AACCTTACCC ATTGGACCAA CACCATTACC GTTATGTATA GCGGTCAGTT TGTCGAGGCT
GGTAGCACTG AGCAAATATT TAATAAACCT ATGCATCCTT ATACTCGCGC TTTAGTCGAT
AGCAGTACCA AGGCCAATTT ACAGCTACCG ACAAAATCTC GACTGATGAC CTTACCTGGT
AGTATTCCCG TTCTTCAACA TTTACCTATA GGTTGTAGAC TCGGGCCTCG ATGCCCTAGA
GCACAAAAAA CTTGTGTAGC TGCCCCTACA GTGAGTAATT ACCATGGTCA TAAAGTAAGT
TGTCATTTCC CTTTACTTAG GGATACAGGA AAAAAAATAA AGGGTTCTAA TTAA
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| Protein sequence | MNLLDIRNLS IELDTPSGRV LAVDRVSLSI KEGEVRGLVG ESGSGKSLLA QAIIGVLEDK
WHVHADRFHW RGIDLLRLSI GERRALLCRD IAMIFQEPMS CLDPTTLIGE QLSEAIDTSQ
LSGFFWQRKK QRKEAVIKLL HKVGIKKHVQ CINSYPHQLT EAICQRVMIA IALAGRPILL
IADEPTAAME STTQGQIFRL LANLNQLKNM SILLISHDLE NLTHWTNTIT VMYSGQFVEA
GSTEQIFNKP MHPYTRALVD SSTKANLQLP TKSRLMTLPG SIPVLQHLPI GCRLGPRCPR
AQKTCVAAPT VSNYHGHKVS CHFPLLRDTG KKIKGSN
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