| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3776 |
|---|
| Symbol | sapB |
|---|
| ID | 3521345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3939958 |
|---|
| End bp | 3940986 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286223 |
|---|
| Product | peptide ABC transporter, permease protein |
|---|
| Protein accession | YP_270443 |
|---|
| Protein GI | 71280876 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.119537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACCT TTACCTTACG CCGCTTAAGT TTATTCATTT TTACCATGTT GGTATTAACC
CTTTTATCAT TCAGTTTAAG CTTTTTATTC CCCGGTGATA CTGTCATTAA TCACTCAGGC
CAGATCAATG CATCAGCAAC AGAACTAGCT CATCTGAATC AAGTTTACCA GATGGATAAA
AGTATATTTA ATCAATACGG TGCATATTTA ACACATATTC TTAATGGTGA TTTTGGTCAA
TCTATGGCGA GTCAATCACC GATTAGTAAT GAAATAATAA AATTATTGCC TGCGACCATA
GAGCTAAGCC TAGTCGCTTT GCTTATCGCC ATGTTAGTGG GTATTCCTTT AGGATTTATT
GCAGCAATTA AGCATAATAA AACCAGCGAC AATGTCATTT TATCACTCGC CATGCTTGGG
TATTCCATTC CGGTTTTTTG GCTGGGTCTA CTAGCAATTC TGGTATTTTC AATAGGACTT
GGTTGGTTGC CATCAGCAGG TCAAATCAGT CTTCTGTTTG AAATAGAGTT TGTCACGGGT
ATTCAATTTT TTGATATTTT ACTTAGCGAT AGTCCTTATA AATGGCAAGC ATTTAGGGAT
GCTAGCGCCC ATATGATTTT ACCCGCTTGT GTTATCGCCT TAGCACCTGC AACTATTTTC
ATCCGCTTAT CACGGGCATC TATGATTGAA GTATTAGCCG CCAGTTATAT CAGAGCAGCT
CGCGCTAAAG GTTTAAGCTT TCAACAGATC ATATTTCGAC ACGCTATACG AAATGCACTA
ATACAAATAA TACGCCACGT AGGTTTACAG TTTGCCAATT TGGTCACTAT TGCTATGGTA
ACTGAGGTTA TTTTTAGCTG GCCCGGCATT GGTCGTTGGC TTATAGATAG TATTTACCAG
CGTGATTACA CTGCTATTCA AAGTGGCTTG TTAGTGCTTT CTTGTTTTAT ATTTATTGTT
CATATTTTAA CAGATTTTAT TTATGCCGCT CTCAATCCAT TAGCGCGAGG TAATAATCAT
GGCTCGTGA
|
|---|
| Protein sequence | MLTFTLRRLS LFIFTMLVLT LLSFSLSFLF PGDTVINHSG QINASATELA HLNQVYQMDK
SIFNQYGAYL THILNGDFGQ SMASQSPISN EIIKLLPATI ELSLVALLIA MLVGIPLGFI
AAIKHNKTSD NVILSLAMLG YSIPVFWLGL LAILVFSIGL GWLPSAGQIS LLFEIEFVTG
IQFFDILLSD SPYKWQAFRD ASAHMILPAC VIALAPATIF IRLSRASMIE VLAASYIRAA
RAKGLSFQQI IFRHAIRNAL IQIIRHVGLQ FANLVTIAMV TEVIFSWPGI GRWLIDSIYQ
RDYTAIQSGL LVLSCFIFIV HILTDFIYAA LNPLARGNNH GS
|
|---|
| |