Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3712 |
Symbol | |
ID | 3518860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3863370 |
End bp | 3864734 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637286159 |
Product | MATE efflux family protein |
Protein accession | YP_270379 |
Protein GI | 71278526 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.139203 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATA ATGAACCTTC ATCATTAAAG CAAAGTATTA AATTAGCTTG GCCTATCTCT TTACAGAGCA TATTGGTCAC CATGCTAGGT ATGAGCGACA TTATGATGGT GGGCCACTTA GGTGATACTG CCGTCGCTTC TGTTGGGCTT GGTAACCGAA TTCAATTTGT TTTTTTAATA ATCTTAGCGG GACTTGCCTC TGGTGTTGGC ACTTTATCTG CGCAGCACTT TGGTGCAGGG CAAATAGGTG TGATTAGACA AATAATTGTT AAAACGCTTG TCATTGCTGC CGGAATATTA CTGCCTATAT TACTGATTAC CTTCTTATTC GCTGGCAATA TAATGGGTAT TGCCACAACA GATCCCAGCG TTATAAACAC AGGGACCAGC TATTTGTGGT TAACAATGCC TAGTTTGATT TTTGTTGTCG TTGTGATGAT ATTTGAAAAT GCCTTAAGGG GACTTGGACA AGTAATTTTC CCTATGTTTA TTAGTATCAT CGCCATTATT ACTAATATTA TTTTAAACTA TTGGTTAATC AAAGGTGGCT TAGGTATAGA GCCAATGGGT GTCATTGGGG CTGCTTTAGC CACACTGCTT GCTCGAGCAC TTCATGCTTT ATTAATACTT ACTTACTTAG CAAAAGTTAA GCACAGTATT TTTCCAACAA CGTTCTTTTG TGCTGATTTT TATAACAAAC AAGCGTGGAC TAAATTACTT ACCTTAGTTT GGCCAATGAT GTTGAGCTTT GGCGTTTGGT CTTTAGGCAC TTTTGTATAT CAACTGATAT ATGGACGAAT TGGTACACAA GAGCTTGCTG TCATGAGTCT ATTAGCCCCT ATCGAAGGTT TACTCGTTTC GTTCTTTTTC GGCTTCGCTT CCGCGTGCGC AATTTTAGTT GGTCAGCGTT TAGGTAAAAA TGAGTTTTCA AATGCATGGT CTTTAGCCAA GAACTACGCT ATCAGTGCGC CAATCATTAC CTTTTTACTT GCGTTAATAT TACTCCAATA TCAATATTTG GTCTTTATGC CATTCAGTAA TTTATCATCA GAAACAATCA CATTATCCCA AGAAATTTTG GTATTGATTT GCTTTGGAAC CTGTTTAAAA GTATTCAACA TGACTATTGC TATGGGGATA TTGCGTGCTG GAGGTGATAA TAAGTATTGT ATGTTCATAG ATATATCGGG GATGTGGATA ATAAGCATAC CATTAACATT TATGGCAGCA TTCTACTTTA TGTTACCCCT GTATTGGGTC GCTCTCATCG CTTACTCTGA GGAAATAATT AAAGCAGTTA TGTTTATTTT CAGAATGAAA ACTAGGCACT GGTTAAAAAA CCTAACCGCT GAAAGTATGG CGTAG
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Protein sequence | MSNNEPSSLK QSIKLAWPIS LQSILVTMLG MSDIMMVGHL GDTAVASVGL GNRIQFVFLI ILAGLASGVG TLSAQHFGAG QIGVIRQIIV KTLVIAAGIL LPILLITFLF AGNIMGIATT DPSVINTGTS YLWLTMPSLI FVVVVMIFEN ALRGLGQVIF PMFISIIAII TNIILNYWLI KGGLGIEPMG VIGAALATLL ARALHALLIL TYLAKVKHSI FPTTFFCADF YNKQAWTKLL TLVWPMMLSF GVWSLGTFVY QLIYGRIGTQ ELAVMSLLAP IEGLLVSFFF GFASACAILV GQRLGKNEFS NAWSLAKNYA ISAPIITFLL ALILLQYQYL VFMPFSNLSS ETITLSQEIL VLICFGTCLK VFNMTIAMGI LRAGGDNKYC MFIDISGMWI ISIPLTFMAA FYFMLPLYWV ALIAYSEEII KAVMFIFRMK TRHWLKNLTA ESMA
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