Gene CPS_3712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3712 
Symbol 
ID3518860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp3863370 
End bp3864734 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content38% 
IMG OID637286159 
ProductMATE efflux family protein 
Protein accessionYP_270379 
Protein GI71278526 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.139203 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATA ATGAACCTTC ATCATTAAAG CAAAGTATTA AATTAGCTTG GCCTATCTCT 
TTACAGAGCA TATTGGTCAC CATGCTAGGT ATGAGCGACA TTATGATGGT GGGCCACTTA
GGTGATACTG CCGTCGCTTC TGTTGGGCTT GGTAACCGAA TTCAATTTGT TTTTTTAATA
ATCTTAGCGG GACTTGCCTC TGGTGTTGGC ACTTTATCTG CGCAGCACTT TGGTGCAGGG
CAAATAGGTG TGATTAGACA AATAATTGTT AAAACGCTTG TCATTGCTGC CGGAATATTA
CTGCCTATAT TACTGATTAC CTTCTTATTC GCTGGCAATA TAATGGGTAT TGCCACAACA
GATCCCAGCG TTATAAACAC AGGGACCAGC TATTTGTGGT TAACAATGCC TAGTTTGATT
TTTGTTGTCG TTGTGATGAT ATTTGAAAAT GCCTTAAGGG GACTTGGACA AGTAATTTTC
CCTATGTTTA TTAGTATCAT CGCCATTATT ACTAATATTA TTTTAAACTA TTGGTTAATC
AAAGGTGGCT TAGGTATAGA GCCAATGGGT GTCATTGGGG CTGCTTTAGC CACACTGCTT
GCTCGAGCAC TTCATGCTTT ATTAATACTT ACTTACTTAG CAAAAGTTAA GCACAGTATT
TTTCCAACAA CGTTCTTTTG TGCTGATTTT TATAACAAAC AAGCGTGGAC TAAATTACTT
ACCTTAGTTT GGCCAATGAT GTTGAGCTTT GGCGTTTGGT CTTTAGGCAC TTTTGTATAT
CAACTGATAT ATGGACGAAT TGGTACACAA GAGCTTGCTG TCATGAGTCT ATTAGCCCCT
ATCGAAGGTT TACTCGTTTC GTTCTTTTTC GGCTTCGCTT CCGCGTGCGC AATTTTAGTT
GGTCAGCGTT TAGGTAAAAA TGAGTTTTCA AATGCATGGT CTTTAGCCAA GAACTACGCT
ATCAGTGCGC CAATCATTAC CTTTTTACTT GCGTTAATAT TACTCCAATA TCAATATTTG
GTCTTTATGC CATTCAGTAA TTTATCATCA GAAACAATCA CATTATCCCA AGAAATTTTG
GTATTGATTT GCTTTGGAAC CTGTTTAAAA GTATTCAACA TGACTATTGC TATGGGGATA
TTGCGTGCTG GAGGTGATAA TAAGTATTGT ATGTTCATAG ATATATCGGG GATGTGGATA
ATAAGCATAC CATTAACATT TATGGCAGCA TTCTACTTTA TGTTACCCCT GTATTGGGTC
GCTCTCATCG CTTACTCTGA GGAAATAATT AAAGCAGTTA TGTTTATTTT CAGAATGAAA
ACTAGGCACT GGTTAAAAAA CCTAACCGCT GAAAGTATGG CGTAG
 
Protein sequence
MSNNEPSSLK QSIKLAWPIS LQSILVTMLG MSDIMMVGHL GDTAVASVGL GNRIQFVFLI 
ILAGLASGVG TLSAQHFGAG QIGVIRQIIV KTLVIAAGIL LPILLITFLF AGNIMGIATT
DPSVINTGTS YLWLTMPSLI FVVVVMIFEN ALRGLGQVIF PMFISIIAII TNIILNYWLI
KGGLGIEPMG VIGAALATLL ARALHALLIL TYLAKVKHSI FPTTFFCADF YNKQAWTKLL
TLVWPMMLSF GVWSLGTFVY QLIYGRIGTQ ELAVMSLLAP IEGLLVSFFF GFASACAILV
GQRLGKNEFS NAWSLAKNYA ISAPIITFLL ALILLQYQYL VFMPFSNLSS ETITLSQEIL
VLICFGTCLK VFNMTIAMGI LRAGGDNKYC MFIDISGMWI ISIPLTFMAA FYFMLPLYWV
ALIAYSEEII KAVMFIFRMK TRHWLKNLTA ESMA