| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3661 |
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| Symbol | pilU |
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| ID | 3522958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3805205 |
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| End bp | 3806332 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286109 |
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| Product | twitching motility protein PilU |
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| Protein accession | YP_270329 |
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| Protein GI | 71282483 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.454931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATCTTC ATGAATTATT AGAAAGGATG GTAAAGCAAG ACGCCTCAGA TATGTTCGTT
ACGGCAAAAT TACCAGTGAG CGCTAAAATA AATGGTGATT TACAGCCTAT AGATGACGTG
GTACTGACTG CTGAACAGTC ATTAGCTTTA GTTTATGACT CCATGAATGA GAAGCAAAAA
AATCAATTTG ATACTGAAAA AGAATGTAAT TTTGCCATTC AAATTGATGA CATCGGTCGT
TTTCGTATTT CTGCTTTTTG GCAACGAGAT ATGGCGGGCA TGGTTGTTCG TCGTATTGTT
ACAGATATTC CTGATGTTGA TGATTTAGGC TTACCTCCGA TTTTAAAAGA TGTGGTTATG
TCTAAACGTG GTTTAGTGCT TTTTGTGGGT GGTACCGGTA CTGGTAAATC GACATCGATG
GCTTCATTGA TAGGTTATCG TAACCGTAAC TCTTGTGGGC ATATTCTTAC TATTGAAGAC
CCAGTGGAGT TTGTTCATGA GCACGGAAAG AGTATGGTCA CTCAGCGTGA AGTTGGCTTA
GATACCGTAT CCTTTGATGC GGCACTGCAA AGCTCATTAC GCCAAGCACC TGATGTCATT
TTAATTGGTG AGATTCGAAA CCAAGAGATA ATGGAGCATG CGCTTAGTTT TGCAGAAACG
GGGCATTTAT GTATAGCTAC CTTGCATGCA AACAATGCTA ACCAAGCTAT TGACCGGATT
ATGCACTTAG TGCCAGCGGA CCAGCATGGA AAGTTGTTGT TTGATTTAGC GTTAAATCTG
CGCGGTATTA TTGCCCAGCA ACTGGTACCG ACAAAAGATG GTCATAGCCG AGTTGCCGCC
ATCGAAGTAT TGCTTAATTC TCCTTATATT AGTGAACTCA TTAAAAAAGG TGACATTGGT
GGTATTAAAG AGGTGATGGA AAAATCAAAT GAATTAGGTA TGCAAACGTT TGACCAAGCA
TTATTCAACC ATTACCAACA GGGTATGATT ACTTATGCGG ATGCATTACA TCATGCGGAC
TCGCCGAATG ATTTACGTTT AATGATTAAA TTGCGCAGTA ATGAGCAGGG TGGTACAGGC
GGCTTATCAG GTGTCACATT AGATGGCTTC GACTCTACAG ATAACTAG
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| Protein sequence | MNLHELLERM VKQDASDMFV TAKLPVSAKI NGDLQPIDDV VLTAEQSLAL VYDSMNEKQK
NQFDTEKECN FAIQIDDIGR FRISAFWQRD MAGMVVRRIV TDIPDVDDLG LPPILKDVVM
SKRGLVLFVG GTGTGKSTSM ASLIGYRNRN SCGHILTIED PVEFVHEHGK SMVTQREVGL
DTVSFDAALQ SSLRQAPDVI LIGEIRNQEI MEHALSFAET GHLCIATLHA NNANQAIDRI
MHLVPADQHG KLLFDLALNL RGIIAQQLVP TKDGHSRVAA IEVLLNSPYI SELIKKGDIG
GIKEVMEKSN ELGMQTFDQA LFNHYQQGMI TYADALHHAD SPNDLRLMIK LRSNEQGGTG
GLSGVTLDGF DSTDN
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