| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3643 |
|---|
| Symbol | |
|---|
| ID | 3519571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3786141 |
|---|
| End bp | 3787175 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637286091 |
|---|
| Product | NAD-dependent epimerase/dehydratase family protein |
|---|
| Protein accession | YP_270311 |
|---|
| Protein GI | 71277971 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0827968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAT TTAAAAAAAT TAAACAAGAA CTACTCAATT CACCAAAGAC TTGGCTTATC
ACAGGTTGTG CTGGTTTTAT TGGTTCGAAT CTTTTAGAAA CATTACTTTT ATTAAATCAG
AAAGTTGTCG GTTTAGATAA CTTCGCTACG GGTCATCAGC ACAACTTTGA TGAAGTTCAA
ACACAGGTTT CGGCTGAGCA ATGGCAAAAT TTTTATTTTG TTAAAGGTGA TATTCGCCAA
TTGGAAGACT GTCAAACCGC GTTAAGCCAT TACAAAAGTG GTGTTGATTA TATCCTTCAT
CAAGCAGCGT TAGGCTCAGT ACCTAGATCA ATTGCTGATC CCCTATTAAC TAACTCAGCA
AATATTACCG GTTTTTTGAC TATGTTAACG GCAGCGAAAG AAACTCAAGT TAAAAGCTTC
GTTTACGCTG CATCAAGTTC TACTTATGGA GATCACCCAG CATTACCTAA AGTTGAAGAT
GCTATCGGTA AACCGCTATC TCCTTATGCA GTAACTAAAT ATGTAAATGA GCTTTATGCC
GATGTGTTTC ATAAAACCTA TGGTTTGAAT TGCACTGGCT TACGCTACTT TAATGTTTTT
GGTAAAAGAC AAGACCCTGA CGGCGCTTAT GCTGCGGTAA TCCCTAAGTG GACAGTTGCA
ATGATCGCTA ATGAAGAATT ACTTATAAAT GGTGATGGTG AAACGAGTCG CGATTTCTGT
TTTGTTGAAA ATGCCGTACA AGCTAATATT TTAGCTGCAA CGGCCAATGA TGCAGGTAAA
AACCAAGTGT ATAATGTTGC CCTCGGTGAT AGAACGAGTT TAAATACCTT ATTTAATAGC
TTGAAAGTTG CCTTACAAGC AAATGGTGTT GATTATCAAA AGTCGCCAAC GTATCAAGAT
TTTAGAGCAG GTGATGTTAG ACATTCACAG GCTGATATTT CTAAAGCAAA ATCTTTGATT
GGCTTTGAGC CTGAGTTTAA AATTCAACAA GGTATAGACA AAGCGATGCC TTGGTATATT
AAATTCTTGA ATTAA
|
|---|
| Protein sequence | MTQFKKIKQE LLNSPKTWLI TGCAGFIGSN LLETLLLLNQ KVVGLDNFAT GHQHNFDEVQ
TQVSAEQWQN FYFVKGDIRQ LEDCQTALSH YKSGVDYILH QAALGSVPRS IADPLLTNSA
NITGFLTMLT AAKETQVKSF VYAASSSTYG DHPALPKVED AIGKPLSPYA VTKYVNELYA
DVFHKTYGLN CTGLRYFNVF GKRQDPDGAY AAVIPKWTVA MIANEELLIN GDGETSRDFC
FVENAVQANI LAATANDAGK NQVYNVALGD RTSLNTLFNS LKVALQANGV DYQKSPTYQD
FRAGDVRHSQ ADISKAKSLI GFEPEFKIQQ GIDKAMPWYI KFLN
|
|---|
| |