Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3631 |
Symbol | |
ID | 3519293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3771043 |
End bp | 3773211 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637286079 |
Product | GGDEF domain-containing protein |
Protein accession | YP_270299 |
Protein GI | 71279208 |
COG category | [P] Inorganic ion transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2703] Hemerythrin |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.770761 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGTCG GCATTGATAG CCTAGATAAC GACCATAAAA AGCTCATTGC CATTTTAGCG CAATTGATGT CTGCCAAAAA TGAAAAGCTT GGACAGGATG ATATTGATGT TATTTTTGAA AGACTTGAAG GTTATTGCCT ATCACACTTT GCTCGAGAAG AAGCCTTACT AGCTAAAATT GACTATAAGC AGCTTGAGGC TCATAAATTG AGTCACCAAG CGTTTATTAA AAAAATACCA CAGTTGAAAG AGCAGTGGTT TGCCAAGGTT ACGGAATCTG AGGCAGTAAA AGATAAAATT ATCTTATTTT TACAGCAATG GTTAATAAAG CATATTTTAG AAGAAGATCT AGACTATGTA CCTGCCATAC ATTGCTTTCA AGAGTTCAGT CGTTATGAAA AAGATAAAAA AGCCAAACAC CCTTGGTTAA GATTTTTCTC CATAAAACTG TCTCACTGTC TTATTTTAAG CCACCGAGTT TTAATCACAA CACTACTGCC TGTTGCAGCA GTGTTACTAC TTTGTTTCTT TATACTTAAA GACAACTACC AACGCTATGA CAGTATTTCT AAGGTATTAG GTCTTAATTC TGTTATCGAG CAAGTCAATG GTATTAGTCA CTCATTACAA GCCGAGCGAG GTTTATCTAC CGGTTACACC AGTTCAAACT ATAGAAGTTT TGCTAAACAA CTAAGACAAC GCCGAAAAAG TACAGATGCT AAAATCCAAT ACTTTTTATG GTTACTAGAG CAGTCTGCTA ACCAAGAAAT AAAAGTAAGT GTTAGTCGTT ATATGACTAA TTTTCAGGAA ATAGTAGCGA ACTTGTCGCG TCACAGAATG CATTTAGACC AGAAAATTGT TGGTTTTGAA GAAACTTATC ATGCTTATAC CCAATTAATT GGACAACTTC TGTCGGTATC TGACCATTTG GTCCATATAG AAATAGGCTC AAGTCACGCC AATGATATTT CAGCCATTAA TGCCATACTA CGTTATAAAG AGTTTATGGG GCAAATCCGT GCTATTGGTA TGAAAATGGC TGAAAACCAT CAAGAAAATA TTTATGGAAA TGTTGAAGTT AGTTTATTGA TAGGAAAACA ATTAAATACC TTGCTCATAT TTAAAAATGC AGCAAATTCA GCTCAAAAGT CAATCTGTGG CCACTATTGT GATGCTTTTG CGCTGCGACA ACACTTAGAG TCTTCTTATC TAGAAACAAT GCAGTTTGAA GATAAAGATG TCAGAGCCGC AAGATGGTTC AAGGTGATGT CAGCAAAAGT CGATAATTTA AATAGCGTGG TTCAAAGACT CATTAACGAA TTTGATGGGC AAATATACAT TGAAAGTCAA AAATTGAAAA AAGAAGGTTA TTTGATCATT CTTGCCATGT TGATATTTTT GTTGGTGGCT ATATTCTTTG CGTTAGTGCT TAATTACAGC ATTATTAGCC CAGTAAGAAA ACTCACCTAC GCATTAAATG ATATGTCTGA AGGGCAGAAT AACATTCACT TTAACCATAT TGATAGCAAA GATGAAATTG GATCTATGCA ATTAGCTTTT GAAAAGCTTC GCCGGAAATT GCTTCAAGGT GATGTGTATA AAGCGACAGT CAGTCAGCAG CAGAAAGAGA TTAAATACCG AAAGTCTCAA CAGGATCATT TTCAGCAACT AGCCTTGACT GATGCTTTAA CCGGTGCTGT TAATCGCCAC CACTTTAACG AGGTACTTGA TCAAGAAATA GCCAATGTTA ATAACCATGG CAGCCCATTA TCTATTATGC TGTTAGATAT TGATCACTTC AAAAGTGTCA ATGACCGTTA TGGTCATGGT GTAGGAGATG AGGTCTTGGT AATGTTCTAT CAAACGTGCG TTGAAGCAGT TCGAAGTAGT GACGTTGTTG CCCGTATTGG TGGTGAAGAG TTCGTGATTA TTATGCCAAA TACTCAGTTG GTCAATGCCC AAAAGTTTGC TGAACGTTTA CGCCAAAAAA TAGCAAAACT TGAATTAAAT ATTGCCAATA ATCAAATATC TGTAACGGTT AGCATTGGGG TGAGTCAGTG GCAAAGTGAA TATTTTACCA ATGCTGAAAC TTTTGTAGCC CATGCGGATA AATCTCTCTA TCAAGCAAAA AATAGTGGCA GAAATAAGGT TGTCGTTGCT CAACAGTGA
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Protein sequence | MSVGIDSLDN DHKKLIAILA QLMSAKNEKL GQDDIDVIFE RLEGYCLSHF AREEALLAKI DYKQLEAHKL SHQAFIKKIP QLKEQWFAKV TESEAVKDKI ILFLQQWLIK HILEEDLDYV PAIHCFQEFS RYEKDKKAKH PWLRFFSIKL SHCLILSHRV LITTLLPVAA VLLLCFFILK DNYQRYDSIS KVLGLNSVIE QVNGISHSLQ AERGLSTGYT SSNYRSFAKQ LRQRRKSTDA KIQYFLWLLE QSANQEIKVS VSRYMTNFQE IVANLSRHRM HLDQKIVGFE ETYHAYTQLI GQLLSVSDHL VHIEIGSSHA NDISAINAIL RYKEFMGQIR AIGMKMAENH QENIYGNVEV SLLIGKQLNT LLIFKNAANS AQKSICGHYC DAFALRQHLE SSYLETMQFE DKDVRAARWF KVMSAKVDNL NSVVQRLINE FDGQIYIESQ KLKKEGYLII LAMLIFLLVA IFFALVLNYS IISPVRKLTY ALNDMSEGQN NIHFNHIDSK DEIGSMQLAF EKLRRKLLQG DVYKATVSQQ QKEIKYRKSQ QDHFQQLALT DALTGAVNRH HFNEVLDQEI ANVNNHGSPL SIMLLDIDHF KSVNDRYGHG VGDEVLVMFY QTCVEAVRSS DVVARIGGEE FVIIMPNTQL VNAQKFAERL RQKIAKLELN IANNQISVTV SIGVSQWQSE YFTNAETFVA HADKSLYQAK NSGRNKVVVA QQ
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