Gene CPS_3569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3569 
Symbol 
ID3519853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp3702198 
End bp3705413 
Gene Length3216 bp 
Protein Length1071 aa 
Translation table11 
GC content37% 
IMG OID637286017 
Productsensory box protein 
Protein accessionYP_270237 
Protein GI71279397 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCCAAA ATTTTGCTTG TCATTTTAGT ATTCGAGCAC GACTAAAAAC GTTTTTATTG 
CTTCCTTGGC TAATCATTTT ATGCTTTGGA CTTAACCATA CCAGTGAGTA TTTAGAGGAT
ATTAAACTGG CGCGTAAAGC TATTTTGTCT ATAGAAATTT CGAGTGAAAT TGACGACTTA
ATCCATGAAC TACAAAAAGA ACGAGGTTTA TCTGCAGGTG TTATCGACCG AAATAGTAAG
AAAAAGTTAG TTCAATTACA AAAACAAAGA CTGCAAACAG ACTCGCGTAT CGAGCACACT
ATTGAGTTCA TCCAACGTAT TGAATTAACG CAGTTAGAGC TTAATACTAT TGCCAGTCAG
CAGGTAATAA ATGACGTGCT TAAAGACATT TTTGTAAGTA TTAAAGGATT ATCAAAAGCA
CGGAGAAAAA TTGATAATTC TGAGAGCCAA GATTACTTTG CTTACTACTC CCAGTTTAAT
GAAGACCTAT TACGTTTAAT ATCACAAGTA CAAGTTCATC TTAAAAGCAC TGAACAAAAT
AGAGATAGTA TCGACTTTCT TAATTTACTC AGACTAGAAG AAAAATCAGG ACAGGAACGT
GGTGCTTTAA ACGCTTTTTT GAATACTAAA CAGCTATACG CCAGCCAGCT CCAGCAAGTT
ATCTCTTATG GAAATGCACA AACAGAGCTC ATTAGTGATT TATTTTCTGT ATCAAAATCG
CATCATCAAC TGTGGTTACA GCGGCAACTT AATTCAGAAA ATAACCAGCA AGTATTGCTC
ATTAGAGACC TACTCAATGA AAGATTAATA CGCGCTGAGC AATTGGCACA ACTTGAACGA
GAAATAGGCT ATGGCGGCTT AATACATGAT TTTAAAAATT ATGTATTAAG AGGAGAAACC
AATTACTTTG ACAGTTTTCT AACTCGCCTA TCTTCCAGTC AAAACTATCT GACAACATTT
AATGATATTG CCAACTTAAC AAATGATGAA AAACAAGCGG TTGATATTAT TGGGCAGACC
TTAAATCGTT ATCACCAGCA TATCTTATTA GCAAAAATGT CAAGAGACAA AGGCAGACAT
GCTGAGCAAA TAGATGACGA AATTCGCATT GATGATAGCC AAGCGGTAGC TGCGATTAAG
AAGCTACAAC AAAATGATGT CGGTATTGAT ACTGAGCAGT GGTGGCATTT GTCTTCGTTA
CGCATTGATG AATTTAGAGC AATAAGCAAT CATATCCTTT CTGAAATGCA GAATTTAGCG
AGTCATGAAG AGCAACAAGC AATCGATAGT TTAGTGCTCT ACATAACAAC ATTTATTTTG
GTCTTTATAA CAACCTTATA CCTCTCTTTC TTAGCGGTTA GGCGCATTGT TGCGAAAATT
AAATATATCA GCACCGCAAT GACAACAATG GAGGTTGAGC ATAAATTTAA TCAGCCATTG
AAAGTCAAAG GAAAGGATGA AATATCCGAT ATGGTGATAG CTTTTAATCA AATGTTAGCC
GAACGTATTA AATCAGAAGG CGAGCAAAGG ATTTCTGCGG CAGTATTTAA GTATGCTTCA
GAAGCAATCA TGATCACGAA TGCAGAGAAT AGGATTGAAA CGGTTAACCC TGCATTTTGT
CATATCAGTG GTTTTAGCAT AGAAGAGGTA TTAGGTAAGT CACCTAATAT TCTAAACTCA
GGTAAGCATG ACAATCATTT TTATCAAAAA ATGTGGCAAT CTCTTGAGCA AGATAATAGC
TGGCAAGGTG AAATTTGGAA TAAAAGAAAA AATGGTGAAA TTTACCCTGA ATTTTTAGCT
ATTTCAGTGG TGAGAGACCA AGATAAAAAG CCACTCCAAT ATATTAGTTT ATTTTCAGAC
ATCACTAAGC ATAAAAAATA TGAGGAAGAT ATTTGGTTAC AAGCTAATTA TGACTCACTC
ACCGGGCTAC CTAACCGTGG TTTATGTGTC GAAAGATTAC ATAATAAGTT AAAGGGGGAT
AAAGCTGAAG ATAGTGAAGT AGCTTTATTG TTCATTGATT TAGATCGGTT TAAATTTGTC
AATGATACCT GGGGACACAG TAGTGGAGAT GAGTTATTAA AGTTGGCGGC GATTCGGTTA
AGAAACTGTA TACGTGAAAA GGATACTGTA GCTCGATTTG GTGGCGATGA GTTTGTTGTT
CTATTAGTAG GCCTATCTAA TCGTTTTGCT ATTGAACGAG TCGTTAAAAA TATCCTGACT
AGTTTATCGA TGCCTTTTCA TTTACGAAAT AATAATGAAG CCGTTGTTTC TGCGAGTATA
GGCGTTACGA TTGGCCCTGT TGATGGTGAC AATGTTGAAT TACTGCTTAA AAATGCGGAT
ACTGCTATGT ATCAAGCAAA AGCTGCGGGC CGCAATACTT TTCAATTTTT TACGAAGAGT
ATGAATGAAA CTGTCAGTAG ACGGATGCAT ATAGAGCAAG CTTTAAGGCA AGCAATTAAG
CGGCAAGAAT TTGTCTTGCA TTATCAACCG GTAGTTTCAC TCGATACGGG GGAAATTATT
GGCGCTGAAG CACTCATTCG CTGGCAACAC CCAGATAAAG GATTAATTTA CCCCGATAGT
TTTATAGAAA TAGCTGAGGA AGCTGGCTTG ATTGAACCTA TTGGACAATG GGTGATTGAA
CAGGCATGTA CTGATTTAAG GTATTGGCAC GATCTTGGTC TGAAAATACA AGTGGCCGTT
AATGTCTCTA GTCGACAATG CAAACAAACA AGTCAAACGC CGATAAAAGA CATCATAAAA
AAAGCCCTGA AAGTTAATAA TATTTCGCCA TCTAGCTTGA AAGTTGAAAT TACCGAAAGT
TCATTGATGG ATAATTCAGA AGAAATGATG ACTACTTTAC AAGATATTCG TAGTTTAGGC
GTTGCTATTT ATATGGATGA TTTTGGTACG GGTTATTCAT CGTTGAGTTA TCTAAAACAT
TTTCCCATCG ATGTAATGAA GATAGATCGT TCTTTTATCG CCGGATCTAT TGATGATAAA
ACCGATGCAA GTTTAGTTGA AGCAGTCGTT TTAATTGGGC ATAGCTTATC GTTAAAACTG
GTTGGTGAAG GTATAGAAAC TAAGCAGCAC TACGACTACC TACGCTCATT AGGTTGCGAT
TACGGCCAAG GTTATTTTAT CTCTAAACCG ATAGCCTCAA AAGCGCTGAT TACCTTATGC
CAACAAGTGG GTAATCCGCC TAAATGGTTA GATTGA
 
Protein sequence
MFQNFACHFS IRARLKTFLL LPWLIILCFG LNHTSEYLED IKLARKAILS IEISSEIDDL 
IHELQKERGL SAGVIDRNSK KKLVQLQKQR LQTDSRIEHT IEFIQRIELT QLELNTIASQ
QVINDVLKDI FVSIKGLSKA RRKIDNSESQ DYFAYYSQFN EDLLRLISQV QVHLKSTEQN
RDSIDFLNLL RLEEKSGQER GALNAFLNTK QLYASQLQQV ISYGNAQTEL ISDLFSVSKS
HHQLWLQRQL NSENNQQVLL IRDLLNERLI RAEQLAQLER EIGYGGLIHD FKNYVLRGET
NYFDSFLTRL SSSQNYLTTF NDIANLTNDE KQAVDIIGQT LNRYHQHILL AKMSRDKGRH
AEQIDDEIRI DDSQAVAAIK KLQQNDVGID TEQWWHLSSL RIDEFRAISN HILSEMQNLA
SHEEQQAIDS LVLYITTFIL VFITTLYLSF LAVRRIVAKI KYISTAMTTM EVEHKFNQPL
KVKGKDEISD MVIAFNQMLA ERIKSEGEQR ISAAVFKYAS EAIMITNAEN RIETVNPAFC
HISGFSIEEV LGKSPNILNS GKHDNHFYQK MWQSLEQDNS WQGEIWNKRK NGEIYPEFLA
ISVVRDQDKK PLQYISLFSD ITKHKKYEED IWLQANYDSL TGLPNRGLCV ERLHNKLKGD
KAEDSEVALL FIDLDRFKFV NDTWGHSSGD ELLKLAAIRL RNCIREKDTV ARFGGDEFVV
LLVGLSNRFA IERVVKNILT SLSMPFHLRN NNEAVVSASI GVTIGPVDGD NVELLLKNAD
TAMYQAKAAG RNTFQFFTKS MNETVSRRMH IEQALRQAIK RQEFVLHYQP VVSLDTGEII
GAEALIRWQH PDKGLIYPDS FIEIAEEAGL IEPIGQWVIE QACTDLRYWH DLGLKIQVAV
NVSSRQCKQT SQTPIKDIIK KALKVNNISP SSLKVEITES SLMDNSEEMM TTLQDIRSLG
VAIYMDDFGT GYSSLSYLKH FPIDVMKIDR SFIAGSIDDK TDASLVEAVV LIGHSLSLKL
VGEGIETKQH YDYLRSLGCD YGQGYFISKP IASKALITLC QQVGNPPKWL D