| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3569 |
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| Symbol | |
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| ID | 3519853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3702198 |
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| End bp | 3705413 |
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| Gene Length | 3216 bp |
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| Protein Length | 1071 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637286017 |
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| Product | sensory box protein |
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| Protein accession | YP_270237 |
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| Protein GI | 71279397 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCAAA ATTTTGCTTG TCATTTTAGT ATTCGAGCAC GACTAAAAAC GTTTTTATTG
CTTCCTTGGC TAATCATTTT ATGCTTTGGA CTTAACCATA CCAGTGAGTA TTTAGAGGAT
ATTAAACTGG CGCGTAAAGC TATTTTGTCT ATAGAAATTT CGAGTGAAAT TGACGACTTA
ATCCATGAAC TACAAAAAGA ACGAGGTTTA TCTGCAGGTG TTATCGACCG AAATAGTAAG
AAAAAGTTAG TTCAATTACA AAAACAAAGA CTGCAAACAG ACTCGCGTAT CGAGCACACT
ATTGAGTTCA TCCAACGTAT TGAATTAACG CAGTTAGAGC TTAATACTAT TGCCAGTCAG
CAGGTAATAA ATGACGTGCT TAAAGACATT TTTGTAAGTA TTAAAGGATT ATCAAAAGCA
CGGAGAAAAA TTGATAATTC TGAGAGCCAA GATTACTTTG CTTACTACTC CCAGTTTAAT
GAAGACCTAT TACGTTTAAT ATCACAAGTA CAAGTTCATC TTAAAAGCAC TGAACAAAAT
AGAGATAGTA TCGACTTTCT TAATTTACTC AGACTAGAAG AAAAATCAGG ACAGGAACGT
GGTGCTTTAA ACGCTTTTTT GAATACTAAA CAGCTATACG CCAGCCAGCT CCAGCAAGTT
ATCTCTTATG GAAATGCACA AACAGAGCTC ATTAGTGATT TATTTTCTGT ATCAAAATCG
CATCATCAAC TGTGGTTACA GCGGCAACTT AATTCAGAAA ATAACCAGCA AGTATTGCTC
ATTAGAGACC TACTCAATGA AAGATTAATA CGCGCTGAGC AATTGGCACA ACTTGAACGA
GAAATAGGCT ATGGCGGCTT AATACATGAT TTTAAAAATT ATGTATTAAG AGGAGAAACC
AATTACTTTG ACAGTTTTCT AACTCGCCTA TCTTCCAGTC AAAACTATCT GACAACATTT
AATGATATTG CCAACTTAAC AAATGATGAA AAACAAGCGG TTGATATTAT TGGGCAGACC
TTAAATCGTT ATCACCAGCA TATCTTATTA GCAAAAATGT CAAGAGACAA AGGCAGACAT
GCTGAGCAAA TAGATGACGA AATTCGCATT GATGATAGCC AAGCGGTAGC TGCGATTAAG
AAGCTACAAC AAAATGATGT CGGTATTGAT ACTGAGCAGT GGTGGCATTT GTCTTCGTTA
CGCATTGATG AATTTAGAGC AATAAGCAAT CATATCCTTT CTGAAATGCA GAATTTAGCG
AGTCATGAAG AGCAACAAGC AATCGATAGT TTAGTGCTCT ACATAACAAC ATTTATTTTG
GTCTTTATAA CAACCTTATA CCTCTCTTTC TTAGCGGTTA GGCGCATTGT TGCGAAAATT
AAATATATCA GCACCGCAAT GACAACAATG GAGGTTGAGC ATAAATTTAA TCAGCCATTG
AAAGTCAAAG GAAAGGATGA AATATCCGAT ATGGTGATAG CTTTTAATCA AATGTTAGCC
GAACGTATTA AATCAGAAGG CGAGCAAAGG ATTTCTGCGG CAGTATTTAA GTATGCTTCA
GAAGCAATCA TGATCACGAA TGCAGAGAAT AGGATTGAAA CGGTTAACCC TGCATTTTGT
CATATCAGTG GTTTTAGCAT AGAAGAGGTA TTAGGTAAGT CACCTAATAT TCTAAACTCA
GGTAAGCATG ACAATCATTT TTATCAAAAA ATGTGGCAAT CTCTTGAGCA AGATAATAGC
TGGCAAGGTG AAATTTGGAA TAAAAGAAAA AATGGTGAAA TTTACCCTGA ATTTTTAGCT
ATTTCAGTGG TGAGAGACCA AGATAAAAAG CCACTCCAAT ATATTAGTTT ATTTTCAGAC
ATCACTAAGC ATAAAAAATA TGAGGAAGAT ATTTGGTTAC AAGCTAATTA TGACTCACTC
ACCGGGCTAC CTAACCGTGG TTTATGTGTC GAAAGATTAC ATAATAAGTT AAAGGGGGAT
AAAGCTGAAG ATAGTGAAGT AGCTTTATTG TTCATTGATT TAGATCGGTT TAAATTTGTC
AATGATACCT GGGGACACAG TAGTGGAGAT GAGTTATTAA AGTTGGCGGC GATTCGGTTA
AGAAACTGTA TACGTGAAAA GGATACTGTA GCTCGATTTG GTGGCGATGA GTTTGTTGTT
CTATTAGTAG GCCTATCTAA TCGTTTTGCT ATTGAACGAG TCGTTAAAAA TATCCTGACT
AGTTTATCGA TGCCTTTTCA TTTACGAAAT AATAATGAAG CCGTTGTTTC TGCGAGTATA
GGCGTTACGA TTGGCCCTGT TGATGGTGAC AATGTTGAAT TACTGCTTAA AAATGCGGAT
ACTGCTATGT ATCAAGCAAA AGCTGCGGGC CGCAATACTT TTCAATTTTT TACGAAGAGT
ATGAATGAAA CTGTCAGTAG ACGGATGCAT ATAGAGCAAG CTTTAAGGCA AGCAATTAAG
CGGCAAGAAT TTGTCTTGCA TTATCAACCG GTAGTTTCAC TCGATACGGG GGAAATTATT
GGCGCTGAAG CACTCATTCG CTGGCAACAC CCAGATAAAG GATTAATTTA CCCCGATAGT
TTTATAGAAA TAGCTGAGGA AGCTGGCTTG ATTGAACCTA TTGGACAATG GGTGATTGAA
CAGGCATGTA CTGATTTAAG GTATTGGCAC GATCTTGGTC TGAAAATACA AGTGGCCGTT
AATGTCTCTA GTCGACAATG CAAACAAACA AGTCAAACGC CGATAAAAGA CATCATAAAA
AAAGCCCTGA AAGTTAATAA TATTTCGCCA TCTAGCTTGA AAGTTGAAAT TACCGAAAGT
TCATTGATGG ATAATTCAGA AGAAATGATG ACTACTTTAC AAGATATTCG TAGTTTAGGC
GTTGCTATTT ATATGGATGA TTTTGGTACG GGTTATTCAT CGTTGAGTTA TCTAAAACAT
TTTCCCATCG ATGTAATGAA GATAGATCGT TCTTTTATCG CCGGATCTAT TGATGATAAA
ACCGATGCAA GTTTAGTTGA AGCAGTCGTT TTAATTGGGC ATAGCTTATC GTTAAAACTG
GTTGGTGAAG GTATAGAAAC TAAGCAGCAC TACGACTACC TACGCTCATT AGGTTGCGAT
TACGGCCAAG GTTATTTTAT CTCTAAACCG ATAGCCTCAA AAGCGCTGAT TACCTTATGC
CAACAAGTGG GTAATCCGCC TAAATGGTTA GATTGA
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| Protein sequence | MFQNFACHFS IRARLKTFLL LPWLIILCFG LNHTSEYLED IKLARKAILS IEISSEIDDL
IHELQKERGL SAGVIDRNSK KKLVQLQKQR LQTDSRIEHT IEFIQRIELT QLELNTIASQ
QVINDVLKDI FVSIKGLSKA RRKIDNSESQ DYFAYYSQFN EDLLRLISQV QVHLKSTEQN
RDSIDFLNLL RLEEKSGQER GALNAFLNTK QLYASQLQQV ISYGNAQTEL ISDLFSVSKS
HHQLWLQRQL NSENNQQVLL IRDLLNERLI RAEQLAQLER EIGYGGLIHD FKNYVLRGET
NYFDSFLTRL SSSQNYLTTF NDIANLTNDE KQAVDIIGQT LNRYHQHILL AKMSRDKGRH
AEQIDDEIRI DDSQAVAAIK KLQQNDVGID TEQWWHLSSL RIDEFRAISN HILSEMQNLA
SHEEQQAIDS LVLYITTFIL VFITTLYLSF LAVRRIVAKI KYISTAMTTM EVEHKFNQPL
KVKGKDEISD MVIAFNQMLA ERIKSEGEQR ISAAVFKYAS EAIMITNAEN RIETVNPAFC
HISGFSIEEV LGKSPNILNS GKHDNHFYQK MWQSLEQDNS WQGEIWNKRK NGEIYPEFLA
ISVVRDQDKK PLQYISLFSD ITKHKKYEED IWLQANYDSL TGLPNRGLCV ERLHNKLKGD
KAEDSEVALL FIDLDRFKFV NDTWGHSSGD ELLKLAAIRL RNCIREKDTV ARFGGDEFVV
LLVGLSNRFA IERVVKNILT SLSMPFHLRN NNEAVVSASI GVTIGPVDGD NVELLLKNAD
TAMYQAKAAG RNTFQFFTKS MNETVSRRMH IEQALRQAIK RQEFVLHYQP VVSLDTGEII
GAEALIRWQH PDKGLIYPDS FIEIAEEAGL IEPIGQWVIE QACTDLRYWH DLGLKIQVAV
NVSSRQCKQT SQTPIKDIIK KALKVNNISP SSLKVEITES SLMDNSEEMM TTLQDIRSLG
VAIYMDDFGT GYSSLSYLKH FPIDVMKIDR SFIAGSIDDK TDASLVEAVV LIGHSLSLKL
VGEGIETKQH YDYLRSLGCD YGQGYFISKP IASKALITLC QQVGNPPKWL D
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