Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3556 |
Symbol | ispE |
ID | 3520265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3694336 |
End bp | 3695238 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286004 |
Product | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
Protein accession | YP_270230 |
Protein GI | 71279804 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.805163 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTGCG CTTCTAACTC GAACTCTTTT CTTAATAAAG CGATTGAATT TCCATCGCCA GCAAAGATTA ACTTATTTTT ACACATTGTC GGACAACGTG AAGATGGTTA TCACAATTTA GAAACACTTT TTCAATTTAT CGATCATAGC GATACTCTTA CCTTAACGGC GACCGAAACG CCTGATATAG AATTATTAAC ACCTATTGAT GGTGTTAATA ATGACGATAA CTTAATTGTC AAAGCAGCAC GATTACTAAA AAATAGAAGT AATACTGATT TGGGCGTTAA GATCAGTATC AATAAAATCC TACCAATGGG TGGAGGTTTG GGTGGTGGTT CATCAAATGC AGCGACCGTT TTAGTTGCAC TCAATTTGTT ATGGCAGTGC GAGTTTTCTT TAAGTGAATT GTCATCGTTA GGTTTGAGTC TTGGCGCCGA TGTACCTATA TTTATTCATG GTTTTTCTGC CTTTGCCCAA GGCGTAGGTG ACCATCTCAC CGCTATCAAA CCTCAAGAGT CTTGGTATTT GATTACTAAA CCTGAATGTA GCATCTCTAC AAAGGAAATT TTTACTGCTG TAGATCTACC TAGAAATACT AAGAAACTTG ACCCCACAGC CCTTAACACT AGCGACTTCG TCACTGAAAG CTTTCATAAT GACTGCCAAA CATTAGTAAT AAAACAGTAT CCCGAGGTTG CCAAGTTACT GGCTTGGTTG GTAGAATACG CACCCTCAAG AATGACAGGA ACTGGAGCGT GTGTTTTTAC GCAATTTTCT AGTTATCAAG AGGCGCGTTC ATTACAAGCG AAACTCCCTA AAGGAATAAG CTCTTTTGTA GCGCAAGGAC TGAATAAGTC TCCACTCTGC TCTGTAATAG CAAAGCTATC ATTGAGCGAG TAA
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Protein sequence | MTCASNSNSF LNKAIEFPSP AKINLFLHIV GQREDGYHNL ETLFQFIDHS DTLTLTATET PDIELLTPID GVNNDDNLIV KAARLLKNRS NTDLGVKISI NKILPMGGGL GGGSSNAATV LVALNLLWQC EFSLSELSSL GLSLGADVPI FIHGFSAFAQ GVGDHLTAIK PQESWYLITK PECSISTKEI FTAVDLPRNT KKLDPTALNT SDFVTESFHN DCQTLVIKQY PEVAKLLAWL VEYAPSRMTG TGACVFTQFS SYQEARSLQA KLPKGISSFV AQGLNKSPLC SVIAKLSLSE
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