| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3540 |
|---|
| Symbol | |
|---|
| ID | 3518884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3680607 |
|---|
| End bp | 3681614 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637285988 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_270214 |
|---|
| Protein GI | 71278511 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAC AAACCATCAC GGTAATTCCT GGCGACGGTA TCGGTCCGAG CATTATAGAT
GCTACGATTA AAATATTAGA TAAAGCAGGC TGTGGTTTTG ATTATGAATT TGCAGATGCA
GGTTTAACCG CCTTAGAAAA GCATGGTGAA TTAGTACCAG AAGAAACGAT CAACCTTATC
GAAAAAAACA AGATCACTTT AAAGGGGCCA TTAACGACTC CTGTAGGTGA AGGTTTTACT
TCAATCAACG TAACCTTACG TAAGCAGTTT AAATTATACG CAAACCTTCG TCCTGTATTA
TCATTTAAGG GCACAAAAGC ACGTTATGAA AACATTGATA TTCTAACGGT TCGTGAAAAT
ACTCAAGGCA TGTATTCTGG TGCTGGCCAA GTTACTTCTG AGGACGGTAC TGAAGCTCAA
GCAATGAGTA TTGTTACTCG TGAAGGCGCT GAAAAAATAT TAACATTTGC TTACGAGACT
GCAATTAAAG AAGGTCGTAA AAAAATAACA GCTGTTCATA AAGCTAATAT CCTAAAATCG
ACTTCAGGTT TATTTTTAAA AGTTGCTCGT GAAGTTGCCC AGCGTTACCC ACAAATTGAA
TCAACAGAAA TGATTGTTGA TAACTGTTGT ATGCAACTGG TTATGAACCC TGAACAGTTT
GATGTTATCG TAACAACGAA TCTATTTGGT GATATTTTAT CAGACTTATG TGCTGGTTTA
GTTGGCGGCC TTGGTATGGC GCCAGGTGCT AATATTGGTG AAGATTGTGC GATTTTTGAA
GCGGTACACG GTAGTGCACC AGATATTGCT GGTAAAAACT TAGCAAACCC AACGTCTGTG
ATATTAGCAG CAATTCAAAT GCTGGAATAC TTAGACATGG GTGATAAAGC AGAAAAGATC
AGAGCTGCTA TTACAGATGT TATTGCATCA GGTGATAGAA CTACCGGTGA TTTAGGTGGT
ACTCATGGTA CTACGGACTT TACTGAAGCA GTACTTGAGA GACTATAA
|
|---|
| Protein sequence | MTKQTITVIP GDGIGPSIID ATIKILDKAG CGFDYEFADA GLTALEKHGE LVPEETINLI
EKNKITLKGP LTTPVGEGFT SINVTLRKQF KLYANLRPVL SFKGTKARYE NIDILTVREN
TQGMYSGAGQ VTSEDGTEAQ AMSIVTREGA EKILTFAYET AIKEGRKKIT AVHKANILKS
TSGLFLKVAR EVAQRYPQIE STEMIVDNCC MQLVMNPEQF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGEDCAIFE AVHGSAPDIA GKNLANPTSV ILAAIQMLEY LDMGDKAEKI
RAAITDVIAS GDRTTGDLGG THGTTDFTEA VLERL
|
|---|
| |