| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3536 |
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| Symbol | |
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| ID | 3521365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3675969 |
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| End bp | 3677579 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637285984 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_270210 |
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| Protein GI | 71280896 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGACA GTTCTGTTGC CCAAAAGCAG CTAGTTGCAC TAAAAAGAAA ACTTGATACT
GCCATCGAGT CTCGTAGTTC ACTAGAAGAT GATTTTAATC TGCAATCTAA TCTGCTCATT
CAATTTATTG GTAAATTAAC GCTAGTTTCC AAAGGCATTG ATCTTGAGCT GGATAACCGT
CTGGCGCAAT TAAGAACCCT ATTTACCAAG TCAGCTCCAA TCTCTGAGAT TGAAGAGAAA
ATTGCAGTTA TCTCGAAATT GTTGCAACAA CACAGCATAA CCAATAGAAA GAATATTTCT
CATGTCCATG AGCAGTTTAG CCAAGCAGGT GAAAGCTTAC AAAAAATAAA TGGCTTACCT
GGAGATTTAC GTAGAGATCT GCGTACCTTG TTAACAGAAA CCAAAGAAGG TAAAGATTCT
TTAATCCAGT ATATTCCTCT ATTAAGTCAA TTATTGACCT TTTATGATCA TTCTCTAAAA
GCCAAAAGTG GTATGGCTAA TCAAGGTATT TTGCAGGCTC CTCCTGTTAC TTCACCCGAA
AATAAAAATG CTATAGTCGG TGGCTCTGTA ATCTTGGATG CTCAATTTCT TGAAAAAATT
TCAATTTCAC TCGGTGCTTT GCCATTATCT AAAGCGCACA CGAGTGATTT ATTAGCCATT
AAGAAAAAAC TAATGACTAA TCAATCAAGT GAGAAAGTAC TGCAAAATTT CATTGATATT
TTTGATGTTA TTGTCGCTGA TTTTAAAGAT GAGCAAAAAA ATGCTAAAAA CTTTTTAACC
ACGCTAAGTG CCACGTTAAC AACGGTACAA AGTGCCGTTA AAGATACCAT TGTTACACAG
AAAAACTCGC AAAAAGCCAA CGATATAATC AATCTCAAGT TACAAAGCCA GTTACTCGAT
ATGACTGGGA CCGTAGAGAA AGCGTTAACA TTGAGTCAAG TAAAAGAAGA TATTAATGAA
AAACTACAAG TCATTGCTAA TACGTTAGAG CAAAAATCAA AATTTGAACA ACAAAATCAC
CAGCAATTAG CTGATAAGCT TAATGATATG TCGGCCAAAG TTGAACAACT TGAACAACAG
AGCGAGATGT TTGAAGAAAA ACTGGCCGAA CAGCAAAGAA AAAGTATGCA AGATGCTCTA
ACCAAACTAG CTAACAGAGC TGCTTTTGAT GATTTCTTTG CAAAATCAAT GATCCGTTTT
CATCGTAAAT CATTCCCGCT TGCCTTAGTC GTTATTGATA TCGATGACTT TAAAAAGATT
AACGATACAT ATGGACATAC CGCTGGCGAT AAAACATTAC AAGTCATTGC TAACTCAATT
GTAAAAAATG TAAGTAAAGG GGTTTTTGTT GGTCGTTATG GTGGCGAAGA GTTTGTTCTT
ATTTATTCTA AAATCCAAGA AGAAGCATTA ACCGCTGAAC TCAATGCTTT GAATAACTTC
GTAGCTCGCT TACCTTTTAA GTTTAAAACG AATAAAGTAA GCATTACCCT TTCAATTGGC
GCAACGCATA TAAAACCTGA CGATAACATC CATATTGCTT TTGAACGCGC AGACCAAGCG
ATGTATAAAG CAAAAAAACA AGGCAAGAAC CAAGTTATTT ACGTTAAGTA G
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| Protein sequence | MNDSSVAQKQ LVALKRKLDT AIESRSSLED DFNLQSNLLI QFIGKLTLVS KGIDLELDNR
LAQLRTLFTK SAPISEIEEK IAVISKLLQQ HSITNRKNIS HVHEQFSQAG ESLQKINGLP
GDLRRDLRTL LTETKEGKDS LIQYIPLLSQ LLTFYDHSLK AKSGMANQGI LQAPPVTSPE
NKNAIVGGSV ILDAQFLEKI SISLGALPLS KAHTSDLLAI KKKLMTNQSS EKVLQNFIDI
FDVIVADFKD EQKNAKNFLT TLSATLTTVQ SAVKDTIVTQ KNSQKANDII NLKLQSQLLD
MTGTVEKALT LSQVKEDINE KLQVIANTLE QKSKFEQQNH QQLADKLNDM SAKVEQLEQQ
SEMFEEKLAE QQRKSMQDAL TKLANRAAFD DFFAKSMIRF HRKSFPLALV VIDIDDFKKI
NDTYGHTAGD KTLQVIANSI VKNVSKGVFV GRYGGEEFVL IYSKIQEEAL TAELNALNNF
VARLPFKFKT NKVSITLSIG ATHIKPDDNI HIAFERADQA MYKAKKQGKN QVIYVK
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