Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3506 |
Symbol | |
ID | 3520383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3642199 |
End bp | 3642915 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637285954 |
Product | ABC transporter, ATP-binding protein |
Protein accession | YP_270180 |
Protein GI | 71279920 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.172031 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCACAT TAAATAATAT CAGCCGCTCA TTTATCGGCG ATGAAGTAGA AACGGTCGCT ATTGACGACA TGAGCTTGAC CATAAAAAAA GGCGAATTCT TGTCAATATT AGGACCGTCG GGCTGCGGTA AGTCAACCTT ACTTAATGTA CTTGGTATGT TAGACCATAT CGACCAAGGG CAGTTTACGT TTTTGAAAAC CAATGTAGGC CAATCAACTG AAAGCCAGCG CGCACAATTA AGAAAACAAC ATATCGGTTT TATTTTCCAG AGTTTTAATT TAATTGATGA ATTAACTGTT GAGCAAAACA TAGAGTTACC GCTTTATTAT CACAAAGTGG CAAAGGCTGA ACGAAAACGT TTAGTTGATG AAGTATTACA TCGTGTTGAT ATTGCTCATC GTCGTAACCA TTTACCCGCG AAATTATCAG GCGGACAGCA ACAACGTGTT GCTATTGCGC GCGCTATTGT TACTCAACCA GACCTAATTC TAGCCGACGA ACCAACAGGG AATTTAGACT CAAAAAACTC GATACAGATA ATGGAATTAC TCCAGCAACT AAACCAAGAA GGGTCAACCA TTGTTATGGT GACTCATGCA CCTGAACATG TAAATTATGG TACGCGTGTT ATTGAGTTGC TCGATGGAAA TATTTGCAAG GACAATCAAA TAAGCTCTCA AATTGAGCTA ACTACTGCGG AGGTGTCATG TGCTTAA
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Protein sequence | MITLNNISRS FIGDEVETVA IDDMSLTIKK GEFLSILGPS GCGKSTLLNV LGMLDHIDQG QFTFLKTNVG QSTESQRAQL RKQHIGFIFQ SFNLIDELTV EQNIELPLYY HKVAKAERKR LVDEVLHRVD IAHRRNHLPA KLSGGQQQRV AIARAIVTQP DLILADEPTG NLDSKNSIQI MELLQQLNQE GSTIVMVTHA PEHVNYGTRV IELLDGNICK DNQISSQIEL TTAEVSCA
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