| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3478 |
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| Symbol | lolD |
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| ID | 3520328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3616564 |
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| End bp | 3617340 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637285926 |
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| Product | lipoprotein releasing system ATP-binding protein LolD |
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| Protein accession | YP_270152 |
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| Protein GI | 71279866 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.741929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAAAG TATTACAATG TTGTCAGCTT TCTAAGTCAT ATATACAAGG TGACATCGAA
ACTAAGGTCT TAAATGACTT AGAACTAAGT GTTGATAAAG GAGAGTTACT TGCGGTAGTT
GGGAGCTCTG GCTGCGGAAA AAGTACCTTT TTACATCTTG CTGGTGCATT AGACTCGCCA
AGTTCAGGCA AGGTGCTTAT TAATAATATT GATATCCATC AGTTGTCTGA TAAAGAAAGA
GCCAAATTTA GAAATGAACA TATTGGCTTT ATTTATCAAT TTCATCACTT GATGATGGAG
TTTAATGCTC AAGAAAATGT AGCGATGCCA TTAATGATCC GAGGTGAAAA ACCAAAGGAT
GCATTGTTAG CAGCTAAAGA AATGCTCGAC CAAGTGGGTT TGTCTCACCG AATTGATTAC
CGACCTTCAC AATTGTCAGG CGGCGAGCGT CAGCGTGTAG CAATAGCTCG TGCATTGGTG
ACTAAGCCAT CTTTAGTGTT AGCTGATGAG CCTACCGGTA ACTTAGATAG CGATACAGCG
GAACAAATTT ATCAATTGAT TCGTAGCTTA AATAAAACAG CCCAGACAAG TTTTGTTATC
GTCACTCATG ATCTGGTCTT AGCGAATCGT ATGGATAGGC AAGTAAAGTT AGTTCAAGGG
CAATTAAGAC CACTTTCGGA TAACAGTGAG CAAGCATTAC CTCCTACTTC AAGTATCACC
GATCCTGCGA ATAACATTAA AGATAATGAA CCTCAGGCAA ATGAACGTCA TGTTTAA
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| Protein sequence | MSKVLQCCQL SKSYIQGDIE TKVLNDLELS VDKGELLAVV GSSGCGKSTF LHLAGALDSP
SSGKVLINNI DIHQLSDKER AKFRNEHIGF IYQFHHLMME FNAQENVAMP LMIRGEKPKD
ALLAAKEMLD QVGLSHRIDY RPSQLSGGER QRVAIARALV TKPSLVLADE PTGNLDSDTA
EQIYQLIRSL NKTAQTSFVI VTHDLVLANR MDRQVKLVQG QLRPLSDNSE QALPPTSSIT
DPANNIKDNE PQANERHV
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