| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3466 |
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| Symbol | ligA |
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| ID | 3521477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3603522 |
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| End bp | 3605591 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637285914 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_270140 |
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| Protein GI | 71281008 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.184307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATG TCGAAAAGAA AATTAGCCAA CTGCAACAGC AGCTTAATCA ATATAATCAT
GAATATTATG TATTAGACCA ACCTAGTGTG CCTGATGCAG AATATGACCG ATTAATGACA
GCATTAATCG ATTTAGAAAA GACTAATCCT GAGCTTAAGA CTATTGACTC ACCTAGCCAA
AAAGTTGGCG GTCAGGCATT AAAATCTTTC ACTCAAGTAA CTCATCAGCT GCCGATGCTT
TCTCTTGATA ATGTTTTTTC TTTAGATGAT TTTCACGCAT TTGTTAAACG CGTAAAAGAT
AGGTTAAATG ACAATCAAGC GATAGTCTTT TGTGCCGAGC CTAAATTAGA CGGTTTAGCA
GTGAGTTTAC GTTATGAGCA CGGGCAGTTA ATACAAGCGG CTACACGTGG CGATGGTAGT
GTAGGGGAGA ATATTACGAC TAACATTCGT ACAATAAAAT CTATTCCGCT TAAGTTAATG
GGCACACCAG GTAAAGATTT TCCTGATATC GTTGAAGTCC GCGGTGAAGT TTTTATGCCT
AAGGCAAGTT TTGACGCATT AAATACATTG GCTAAAAAAC GTGGCGAGAA AGGTTTTGCA
AATCCACGTA ATGCAGCGGC GGGAAGTTTA CGACAACTTG ATTCTAAAAT CACCGCTAAA
CGTAATTTAG CTTTTTACGC TTATAGCCTT GGATTTGTAG GGAAACTGTC TGATGGAGGC
GCTGAAAGTA CCGATTTAAC CAATGACTTT TTTGCTAACT CTCATCATGA AAGACTATGT
CAGCTTAAAA GGTTGGGTTT GCCTATGTGT CCAGAAGTAC GCTTACTTGA AAGTGAGCAA
GCCTGTGATG CGTTTTATCA AGATATCTTA GCAAAGCGTA GTGCCTTGAG TTATGAAATT
GATGGCACTG TATTAAAAGT TGATGAAATC TCTTTGCAGA AACGTTTAGG GTTTGTCGCA
CGTGCCCCAC GTTGGGCTAT TGCTTATAAA TTCCCTGCGG AAGAAGAATT AACCTGTGTT
GAAGATGTCG AGTTTCAAGT AGGGCGTACC GGCGCGATTA CTCCCGTAGC ACGTTTGAAA
CCGGTATTTG TTGGTGGCGT AACAGTTTCT AATGCCACAT TACATAACCA AGATGAAATA
ACCCGATTAG GGCTGAAAGT GAATGATTTC GTGGTTATCC GCCGTGCCGG TGATGTTATT
CCTCAAATTG TTAGCGTAGT ACTTGATAAA CGACCAGATA ATGCCGTCGA TATAGTCTTT
CCTACCAGTT GCCCTGTTTG TGACTCTGCA GTGGCTAAAC CTGAAGGTGA AGCCGTACTG
AGATGTACCG CCGGACTTTT CTGTGCGGCG CAAAGAAAAG AAGCTATTAA ACATTTTGCT
TCTCGAAAAG CACATGATGT TGATGGTTTA GGTGACAAAC TAGTAGAGCA ACTTGTAGAT
GAAAAGTTAA TTAATACGCC CGCTGATTTA TTCAAATTAA CCGAAATACA AGTTAGTACT
ATAGATCGTA TGGGTAAAAA ATCAGCGACC AATTTAATTA ATGGACTTGA GCAGGCTAAA
AGTACCACAC TAGCAAAATT TATTTATGGT CTGGGCATAC GCGAAGTCGG TGAAGCAACT
GCTGCTAATC TAGCAAATCA TTTTTATACC TTAGCGGCAA TTGAAAGTGC TTCTCTTGAA
GACTTACAAA ATGTTTCAGA TGTTGGCGAA GTCGTTGCCA AAAATATTAT TAATTTCTTT
AAAGAAGAGC ATAACTTAGC GATCGTTTCT GGACTAAGTG AAGTAATGCA CTGGCCAACT
ATTGAAATAA AGTCAGCTGA GGAGTTACCG CTTGCAGAGC AGATATTTGT TTTAACAGGC
ACATTAACCC AAATGGGAAG AACTGAAGCT AAAACAGCCT TACAGTCCTT GGGAGCTAAA
GTATCAGGTA GTGTCTCGAA GAATACACAC TTCGTTGTTG CAGGTGATAA AGCGGGATCT
AAACTGACTA AGGCTCAGGA TTTAGGTATC TCAGTGCTTA CCGAAGATGG GTTAGTAGCG
TTACTTGCCG AACATGGCAT AACTATTTAG
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| Protein sequence | MSNVEKKISQ LQQQLNQYNH EYYVLDQPSV PDAEYDRLMT ALIDLEKTNP ELKTIDSPSQ
KVGGQALKSF TQVTHQLPML SLDNVFSLDD FHAFVKRVKD RLNDNQAIVF CAEPKLDGLA
VSLRYEHGQL IQAATRGDGS VGENITTNIR TIKSIPLKLM GTPGKDFPDI VEVRGEVFMP
KASFDALNTL AKKRGEKGFA NPRNAAAGSL RQLDSKITAK RNLAFYAYSL GFVGKLSDGG
AESTDLTNDF FANSHHERLC QLKRLGLPMC PEVRLLESEQ ACDAFYQDIL AKRSALSYEI
DGTVLKVDEI SLQKRLGFVA RAPRWAIAYK FPAEEELTCV EDVEFQVGRT GAITPVARLK
PVFVGGVTVS NATLHNQDEI TRLGLKVNDF VVIRRAGDVI PQIVSVVLDK RPDNAVDIVF
PTSCPVCDSA VAKPEGEAVL RCTAGLFCAA QRKEAIKHFA SRKAHDVDGL GDKLVEQLVD
EKLINTPADL FKLTEIQVST IDRMGKKSAT NLINGLEQAK STTLAKFIYG LGIREVGEAT
AANLANHFYT LAAIESASLE DLQNVSDVGE VVAKNIINFF KEEHNLAIVS GLSEVMHWPT
IEIKSAEELP LAEQIFVLTG TLTQMGRTEA KTALQSLGAK VSGSVSKNTH FVVAGDKAGS
KLTKAQDLGI SVLTEDGLVA LLAEHGITI
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