| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3415 |
|---|
| Symbol | |
|---|
| ID | 3519745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3545239 |
|---|
| End bp | 3546132 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637285863 |
|---|
| Product | putative branched-chain amino acid ABC transporter, permease protein |
|---|
| Protein accession | YP_270090 |
|---|
| Protein GI | 71278067 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTG AACTCTTAAC TCAATTAGTC ATCAATGGCC TTATTGTTGG CTTGTTGTAC
GGTGTAATTG GTATGTGTTT TGTGTTGGTT TATAAATCAA CCCAAATTGT TAACTTCGCC
CAAGGTGAGT TTTTACTTAT CGGTGCCTGG GTATGTTGGG CGTCATTGAT TTACTTAGAG
TTACCATTCT TTTTAGGTTT TATATTATCA CTTGTATTTA TGGCCGGCTT TGGTGTGCTG
TTACAAATGG TCGTACTACG TCCTATGATT GGTGAGCCGA TCATCTCGGT GATCATGGTC
ACTATCGGTC TGTCTATTTT CTTCCAATCG TTAATGAAAT GGATATTTGG AGTCTCCCCA
CAAAGTTACC CGCAAGTATT TGATACGCAA AGTATTAACA TCTTGGGATT AAATGTGGAA
ATGGCGTACT TAATGAGCAC GGTAATCGCG TTAATTATCA TGGTCGCGTT CTATTTATTC
TTTAAACACT CTAAGCATGG CTTAGCAATG AGAGCGACTG CTTTTGATCA ACAAGCCTCG
CAAAGTCTAG GTGTGTCTGT AAAGCATGTT TTTGCGATGA GTTGGGGTAT TGCAGCAACC
GTTTCTGCTA CGGCAGGGAT AGTGCTAGGT ATGGTTAATG GTGTTTCAGA TTCACTTTCT
ATTATGGGTA TCAAAGTATT CCCAGCCGTT ATTTTAGGCG GGTTAGACTC AATTATTGGC
GCCATTGTTG GTGGTCTCAT TATCGGTGTA CTAGAAAACG TCGCTGAGTT TTTTGATAGT
CAATATTTAC ACATTGGTAA TATGTACGAT ATCGCACCAT TTTATGTGTT GTTAATTATT
CTTTGGTTCA AACCTTACGG TTTATTTGGC ACCAAAGACA TTGAACGTAT ATAG
|
|---|
| Protein sequence | MNFELLTQLV INGLIVGLLY GVIGMCFVLV YKSTQIVNFA QGEFLLIGAW VCWASLIYLE
LPFFLGFILS LVFMAGFGVL LQMVVLRPMI GEPIISVIMV TIGLSIFFQS LMKWIFGVSP
QSYPQVFDTQ SINILGLNVE MAYLMSTVIA LIIMVAFYLF FKHSKHGLAM RATAFDQQAS
QSLGVSVKHV FAMSWGIAAT VSATAGIVLG MVNGVSDSLS IMGIKVFPAV ILGGLDSIIG
AIVGGLIIGV LENVAEFFDS QYLHIGNMYD IAPFYVLLII LWFKPYGLFG TKDIERI
|
|---|
| |