| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3258 |
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| Symbol | |
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| ID | 3518402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3390465 |
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| End bp | 3394085 |
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| Gene Length | 3621 bp |
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| Protein Length | 1206 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637285707 |
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| Product | sensory box protein |
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| Protein accession | YP_269948 |
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| Protein GI | 71278809 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCTGA TGAATACTAA CTCTCGTAAA ATTCTCTTTA TTTCTATATC CGTAACACTA
TTCACCATGG CAATCGTTTA TTATTCATTC CTCATCGGAC GCGATATAGC AGAACGTTAC
ACGCCTTTAG TTGATGCCAC TATGGAAATT AAACTTGAAG CGACCACAGC ACATTTGTGG
TTTGAAGAGA TGATGAGTGG TGACCAAACG GTTGATATCG AAACTATCTG GGCCAACCTT
GACCAATCCG AATGGTATGC TCAAGCAATG CTTGACGGTG GCACTAATGA GGAAGGCACC
TTCCTCGCTT TAAATGACCC TGATTTACGT AGCCAAATTG AAGAAACAAT AGATGGTATT
CATCACTTTC GCCAAATAGC AAAAAAGCGA TGGGCATCAC AGTCAACATC GGGTGTCGGT
TCTGGTATCG AACAACAATT TGACCTCGCC TTTTTAAAAT TTAATCTTTC TACTGATAAT
GTTGAGAGCG CCTTACAGAA GGTAAGAGCA GAAGATTTAC AAACATTTAA ATTTACACAA
GTATTATTAA TCACCCTGCT TCTTATATTG GGCATCATCA TCGGTGGTTT ATCCCTTCGC
TTTAACAATA AACGAATCAA AAATATAGAC GTACTAAAAT TGAGCAATGA AAACGTTAAT
TCCTCTCAGA AACAGCTTCT AAATGTAATT AATGGAGCGA AGCTGGGTTA TTGGGATTGG
TGTTATCAAA CTGGAGAGCA TGTTGTTAAT GATGAATGGT TATCAATACT TGGTCTATCT
CGTCAAGATA TCACCAATCA CATTAGTGAT TGGGATGGAC TTATTCATCC CAATGACGAC
CAATTTATGA AAAAGACTGT CCAAACTCAT ATTCTGTCTG GAAAAAATTA TGTTGTTGAA
TTCAGAATGA AGCATGCTGA TGGGCGATGG GTATGGATTC AAGGCTCTGG CTCTGTTATT
GAGTACGACG AAAATACCCA CGAACCTGTT CGACTTTGTG GAACACATCA AGATATTACC
GTTCGGAAAC TAGCTGAACT ACGTGAAAAA TCGCGTTCTC ATGTATTAGA ACTCCTTACA
AGTGGCGACT TATTACCTGT AATTTTGGAA GCTATTGTAC GCGGTGTTGA GCAAGAGAAT
TCAGACATGC TATGTAGTAT TTTGTTGTTA GATGATGAGG GTAAGCATCT ATTGAGTGGC
GCAGCACCGA GCCTTCCTGA TTTCTATAAC TCCGCGATTA ATGGCATTGA GATTGGTGTA
GGGGTTGGCT CTTGTGGTAC TGCCGCATTT ACCAACAAAC GTGTCATCGT TGAAGACATT
CAAAATCATC CTTATTGGAC TCCCTATAAA GAGCTAGCAA GTAAGGCGGG GTTGGGGGCG
TGCTGGTCTG AACCCATACG TTCCACTCAA GGGAAGATTC TCGGCACTTT TGCTATTTAT
CACCTTGAGG TAAATAAGCC AACAGAAGCC AATATGACAT TAATTGAGCA AGCAGCCAGT
TTAGCAAGTA TCGCCATTGA GAAAATCCAA GCCAACTTAG CCTTAAAGGC AAGCGATGAG
CAAATGCAAC TAGTCTTAGC GGGGGCCGAT CTAGGTTTTT GGGATTGGAA TATAGTCACA
GGTAGAGTAG ATAGAAATGA GCGTTGGGCA ACTATGCTGG GATATACCCA TAAAGAATTA
AAACACAGCA CTAATCAATG GGCAGATTTC GTACATCAGG AAGATAGAGA GAAAGCATGG
CAATCAATTA ATGACGTACT TGAAGGTCGA TCAAAATCCC ATAGCCTTGA ATATCGCATG
TTAACTAAAG AGGGTGGTTA TAGATGGGTG CATGACCAAG CTAATGTGAT GCAACGTCAT
AGTAATGGCA AGCCACTTCG TATGAGCGGT ACACATAGTG ATATAACCAA CCGTAAACTA
GCAGAAGAAA AAATAAAACT AGCAGCTAGT GTTTTTAGCC ATGCAGGTGA AGGCATTATT
ATCACCGATG ATAAAGCCAC TATTATCGAT ATTAATGACG CCTTTACTAA TATAACCGGT
TTTAGTCGTG AAGAGGCTAT TGGTAAAAAT CCACGTATTC TCCAGTCAGG ACGACAAACA
CCTGAGTTCT ATGCGGATAT GTGGCAAGCC CTACAGAATG AAGGCTATTG GTCTGGCGAA
GTTTGGAACA GACGTAAAAA TGGTGAAGTG TATGCCGTAA TGCAAACTAT CAGTGCCGTA
CGTGATGTAC ACGGTATTGC GACCCATTAT GTTTCCTTAG GTAACGACAT AACCCTGATG
AAAGAACATC AGAATCAACT GGAGCACATA GCCCATTTCG ACATACTCAC TAATTTGCCT
AATCGCGTAT TGCTGGCAGA CAGATTGTCT CAAGCCATGT TGCAGTGTAG CCGTCACAAA
CAGTCCCTCG CTGTCGTATT CTTAGATTTA GATGGGTTTA AACACGTCAA TGATACTCAT
GGGCATGATA TAGGTGATGA ACTACTGATT GCCCTCTCTG TGCGCATGAA AGAAGCATTA
CGGGAAAATG ATAGTTTAGC ACGTATTGGC GGTGATGAAT TTGTTGCTGT GTTAGCTGAT
TTAACCACAG TTGAAGATTG TGAACCCGTA TTAGAACGGT TATTACTCGC TGCATCAGAG
CCGGTTATTT TTGATAACAT TGTATTGAAT ATATCAGCCA GCATTGGCGT CACACTCTAT
CCGCAAGATA ATGTGGGTGC CGACTTACTC ATGCGGCATG CCGACCAAGC CATGTATGTG
GCTAAAGAAT CAGGTAAGAA TCGTTATCAC TTATTTGATA CGGCCCAAGA TGACGCAGTG
AAAGTACAAC GGGAAAGCTT AGAGGCAATT CGAAGCGCGT TAGATAATCA TCAATTTGTT
CTTCATTATC AACCTAAAGT TAATATGAGG AAGGGTATAG TGACGGGAGT TGAGGCGCTT
ATTCGCTGGC AACATCCGAA ACGAGGGCTA TTAAACCCAA TCGAGTTCTT ACCTGTCATT
GAAAATAACC CCATGAGTAT TGAGATGGGT GAATGGGTTA TTGATACCGC ACTGACACAA
ATAAGCCAAT GGCAAAAATT AGGACTTAAC TTCCCAGTAA GTATTAGCGT AAATATTGCA
GCGTTACAGT TGCAGCAGCC TGACTTTACG GACAGGTTAA TGATACTACT AGCAGCCCAC
CCCGATGTTG AACCACACTA TTTAGAGTTA GAGGTACTGG AAACAAGTGC CTTAGAAGAT
GTATACAATG TTTCAACAAT AATGAATGCC TGTATGGCGC TAGGCGTAAA TTTTGCCCTA
GATGATTTTG GCACGGGCTA TTCGTCCCTG ACTTACCTAA GACGATTACC AGCAAACTTA
ATTAAGATAG ACCAAAGTTT TGTAAGAGAC ATGTTGCATG ACTCGGATGA TCTGGCCATT
GTTGAAGGCG TAATAGCGTT AGCTAAATCA TTCAAACGGG ACGTGATTGC AGAAGGCGTT
GAAACGATTG AACATGGCAC AGCACTATTG CAGCTAGGAT GTGAATTAGC ACAAGGTTAT
GGCATTGCTA GGCCAATGCC TGCCAGTGAA ATTCCTACGT GGATTAGTGA CTGGAAGCCA
GATGTTAATT GGCAAAACTG A
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| Protein sequence | MYLMNTNSRK ILFISISVTL FTMAIVYYSF LIGRDIAERY TPLVDATMEI KLEATTAHLW
FEEMMSGDQT VDIETIWANL DQSEWYAQAM LDGGTNEEGT FLALNDPDLR SQIEETIDGI
HHFRQIAKKR WASQSTSGVG SGIEQQFDLA FLKFNLSTDN VESALQKVRA EDLQTFKFTQ
VLLITLLLIL GIIIGGLSLR FNNKRIKNID VLKLSNENVN SSQKQLLNVI NGAKLGYWDW
CYQTGEHVVN DEWLSILGLS RQDITNHISD WDGLIHPNDD QFMKKTVQTH ILSGKNYVVE
FRMKHADGRW VWIQGSGSVI EYDENTHEPV RLCGTHQDIT VRKLAELREK SRSHVLELLT
SGDLLPVILE AIVRGVEQEN SDMLCSILLL DDEGKHLLSG AAPSLPDFYN SAINGIEIGV
GVGSCGTAAF TNKRVIVEDI QNHPYWTPYK ELASKAGLGA CWSEPIRSTQ GKILGTFAIY
HLEVNKPTEA NMTLIEQAAS LASIAIEKIQ ANLALKASDE QMQLVLAGAD LGFWDWNIVT
GRVDRNERWA TMLGYTHKEL KHSTNQWADF VHQEDREKAW QSINDVLEGR SKSHSLEYRM
LTKEGGYRWV HDQANVMQRH SNGKPLRMSG THSDITNRKL AEEKIKLAAS VFSHAGEGII
ITDDKATIID INDAFTNITG FSREEAIGKN PRILQSGRQT PEFYADMWQA LQNEGYWSGE
VWNRRKNGEV YAVMQTISAV RDVHGIATHY VSLGNDITLM KEHQNQLEHI AHFDILTNLP
NRVLLADRLS QAMLQCSRHK QSLAVVFLDL DGFKHVNDTH GHDIGDELLI ALSVRMKEAL
RENDSLARIG GDEFVAVLAD LTTVEDCEPV LERLLLAASE PVIFDNIVLN ISASIGVTLY
PQDNVGADLL MRHADQAMYV AKESGKNRYH LFDTAQDDAV KVQRESLEAI RSALDNHQFV
LHYQPKVNMR KGIVTGVEAL IRWQHPKRGL LNPIEFLPVI ENNPMSIEMG EWVIDTALTQ
ISQWQKLGLN FPVSISVNIA ALQLQQPDFT DRLMILLAAH PDVEPHYLEL EVLETSALED
VYNVSTIMNA CMALGVNFAL DDFGTGYSSL TYLRRLPANL IKIDQSFVRD MLHDSDDLAI
VEGVIALAKS FKRDVIAEGV ETIEHGTALL QLGCELAQGY GIARPMPASE IPTWISDWKP
DVNWQN
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