| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3250 |
|---|
| Symbol | |
|---|
| ID | 3520472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3382268 |
|---|
| End bp | 3383680 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637285699 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_269940 |
|---|
| Protein GI | 71280009 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.158912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATC CTATTGTTCC ATTGACAAAA TTTGGATTAT TTAGAGCACA AACATATGCG
GTATTGAAAC GGCCCTATTT GGTAACAGCT TTAGTTTCTT ATTTCATGGT TGCCCTGCTT
GTAATAATTT ATTTAAATAA AGCCCCTTCA TTTACCAGTG ATATGGAGAT GGTATTACCA
GGTACTGGTA GTAGTAACAG TGTATCGTTG GATAATGTTG GTCAAGTTGT CTCACAAACT
AATACACCCT TTTCTGGTGG TGGTTTTAAC CCTCGTGTTA ATTATAAAGA AATGTTATCA
AGCAGAGGCG TAAGAGCTCG TGCGGCAAAA AAACTGCACC TTTCGCTTGA GGATCTTGGT
GAACCAAGAA TTAAACTGAC TGAACAAACG TCAATTATTT CACTTGAGAT GAGTGCTAAT
GGTCAAGAAT TAGCGCAAGC AAAGACGCTT GCCTTATATG AGTCTCTCCA AGATGAACTA
AATAACTTAA GAGCCGATGA AGTATTACGT CGAGATCAAA GTATTGAACA AGTGCTTGAC
CGATACCGAG AACGAATGAA CATAACACGT AATGCCATTG TTGATTTTCA ACAGCGTTCA
ATTGTCGTTT CAACAGACCA AATGGACCAA TTAGTGAGAA CCCTTTCTGG GGTTAGAGAA
AAACACCTCT ATGTCAAAGC CGAAACAAAA CAATTGCAAG AGTATATATA TCAGTTAAGT
GACGAGTTAG GCGTATCACC CAAGTTAGCT GGGCAAGCTT TCGCCCTGCA ATCTGATGTT
GAATTTCGTG CTTACATTAC CGAGTTAAAG GAAAGCATAA CCCAACTTAC AGAGTACAGT
TCAAGGTGGG GAGTGAATCA TCCTAAAGTT AAAGCGCAAC AAAAGAGATT AAACTTTACC
CGTATCTCGA TTAACGAGCG AAGTAGCCAA ATGTACGGGG TAAATTCTAA TGAAATATTT
AATTCATTGA ATTTAGATTT AAACCCGAAA CGATCTGAGT TATTTGCTGA TTTAATTGAC
GCTTATGCAA AGCAAAAGGG CCAAGAGTCG ATGCTCGAAG ATTTAGGCCG TTCAGCCCTG
CACTTGGGGG ACCAATTAAA AATTTATTCT CGAGAAATTG TGGAGTTAGA GCGCTTACAA
AGAGAGTTCA ACATGGCTGA AGCAATTTTC ACCTCTGCAG CAGCACGACT TGAAGCGAGT
AAGTCAGATG TTTTTGCCTC TTATCCCGTG CTGCAAATGT TAACAACCCC CTCATATCCA
ATGAAACAAA GCAGCCCTAA AAACATTATT GCTTTTATAG GTGCAATAAC TGGATTTATA
TTTATCACCT TAGGATTAAT TATTTTATCT CAACGTAATA AGTTAATTCA AATAATACTT
AAAAAAGAGG AAACAACTTC AAGTAATAGT TAA
|
|---|
| Protein sequence | MKYPIVPLTK FGLFRAQTYA VLKRPYLVTA LVSYFMVALL VIIYLNKAPS FTSDMEMVLP
GTGSSNSVSL DNVGQVVSQT NTPFSGGGFN PRVNYKEMLS SRGVRARAAK KLHLSLEDLG
EPRIKLTEQT SIISLEMSAN GQELAQAKTL ALYESLQDEL NNLRADEVLR RDQSIEQVLD
RYRERMNITR NAIVDFQQRS IVVSTDQMDQ LVRTLSGVRE KHLYVKAETK QLQEYIYQLS
DELGVSPKLA GQAFALQSDV EFRAYITELK ESITQLTEYS SRWGVNHPKV KAQQKRLNFT
RISINERSSQ MYGVNSNEIF NSLNLDLNPK RSELFADLID AYAKQKGQES MLEDLGRSAL
HLGDQLKIYS REIVELERLQ REFNMAEAIF TSAAARLEAS KSDVFASYPV LQMLTTPSYP
MKQSSPKNII AFIGAITGFI FITLGLIILS QRNKLIQIIL KKEETTSSNS
|
|---|
| |