| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3187 |
|---|
| Symbol | |
|---|
| ID | 3521626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3317673 |
|---|
| End bp | 3318746 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637285636 |
|---|
| Product | putative permease |
|---|
| Protein accession | YP_269883 |
|---|
| Protein GI | 71281155 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.295884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGT TATTTAGTGA TTGGTATACA CGTAAGTTTT CAGATCCTCA CGCGGTCACG
TTGGTTGTTA TTTTAGTCTG TATAGCATTA TTTATTGCTT TATTTAGCAA TTTATTGATG
CCGGTATTTG TTGCAATAGC ATTAGCTTTT TTGTTAGACC TTCCAGTTAA CAAACTAATG
CAAAGCTCAA TGTCGCGTTC TAGTGCTACG GTAGTAGTTG TTGTTACTTT TCTAAGTTTC
TCCTTATTAG CTGTATTAGG TTTAATGCCT ATTATTTGGA AGCAAAGCAG TAATTTATTG
CAAGAAGTTC CTCATATGAT CAGTCAAGGA CAAGGTTACT TATTGACCTT GCCAGAGAAA
TACCCTGATT TTGTCCACGT CTCGCAAATT GAAAGTTTCA TTGTCATGGT TAATGATAAT
TTACTTGAAT GGGGGCAGGT TGCACTTAGA GCGTCTTTGA ACTCAATTTC CGATATTGTC
GCCTTAATGG TTTATTTGAT CCTTGTACCG TTAATGGTGT TCTTCTTTTT AAAAGATAAA
ACAGAGTTAA TGAGCAGTAT TGCCCACTTC TTGCCTAAAG AACGCCGCAT GGCAATTAAA
GTGAGCCAAG AAATGAACCA ACAAATTTTA AATTATATTC GCGGAAAAGT GATTGAAATA
ATTATTGTTG GGGCATCTAC TACTATTGCT TTTATCTTTC TTGATTTGCA ATATGCCTTA
CTATTGGGGG TTTTAGTCGG CTTATCAGTA CTTGTTCCTT ATGTAGGTGC AACCGTTGTC
ACCTTACCTG TGCTCTTAGT TGCTCTTTTT CAGTTCGGTA TCAGTAGTGA GTTTGGTTAC
GTTATGCTTG CTTATGGTTT AATTCAGGCG ATTGATGGTA ATGTTATTGT GCCTTTGCTG
TTCTCTGAAG CTGTTAATTT ACACCCCGTG GTCATTATTA TCGCGGTGAT ATTTTTTGGT
GGTTTATGGG GATTTTGGGG CATATTTTTT GCAATCCCTT TGGCAACATT AGTCAAAGCT
GTCATTAATG CTTGGCCGTC TATTCCGGGA CCTGCCGTGA CGAGTGAAAG CTAA
|
|---|
| Protein sequence | MFKLFSDWYT RKFSDPHAVT LVVILVCIAL FIALFSNLLM PVFVAIALAF LLDLPVNKLM
QSSMSRSSAT VVVVVTFLSF SLLAVLGLMP IIWKQSSNLL QEVPHMISQG QGYLLTLPEK
YPDFVHVSQI ESFIVMVNDN LLEWGQVALR ASLNSISDIV ALMVYLILVP LMVFFFLKDK
TELMSSIAHF LPKERRMAIK VSQEMNQQIL NYIRGKVIEI IIVGASTTIA FIFLDLQYAL
LLGVLVGLSV LVPYVGATVV TLPVLLVALF QFGISSEFGY VMLAYGLIQA IDGNVIVPLL
FSEAVNLHPV VIIIAVIFFG GLWGFWGIFF AIPLATLVKA VINAWPSIPG PAVTSES
|
|---|
| |