| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3179 |
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| Symbol | dapE |
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| ID | 3518761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3312564 |
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| End bp | 3313763 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637285628 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_269875 |
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| Protein GI | 71278622 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0449668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTAAAA TTGAACAAAA AAATCAAAGT GAAGTTATTA AGCTGGCAAT AGACTTAATG
TCTAGAGCCT CAGTTACCCC AGAAGATGCT GGCTGTCAAA AATTGATGGC ACAACGATTG
GCACAACTTG GGTTTACTAA TGAAAGCATG ATTTTTGCCG ATACCACAAA CCTTTGGTCT
CGTCGTGACA GCACTAATGC TACGAAAGAA GATGACTTAG TTTTTTGTTT TGCTGGCCAC
ACCGATGTAG TACCAGCAGG CAACCTTGAA TTATGGAATA CCCCGCCATT TGAGCCAACG
ATTATTGATG GTATGTTATA TGGCCGTGGC GCAGCAGACA TGAAAGGTAG TCTCGCGGCA
ATGATAGTGG CGACAGAACG CTTTGTTCAA GACCACCCAG ATCATCACGG TTCAATCACT
TATTTAATCA CAAGTGATGA AGAAGGCCCC TTCATCAATG GCACCACTAA AGTGATTGAT
ACGTTAGAGG CGCGTAATGA AAAAATCACT TACTGCATAG TCGGTGAACC TTCAAGTACT
CACGCCGTCG GCGATATCGT GAAAAATGGC CGACGTGGTT CTATTTCTGC TGAAGTAGAT
ATTAAAGGTA AACAAGGTCA TGTTGCTTAC CCTGATCATG TGAGAAATCC GATTCACTTA
GCTATGCCAG CATTAACAGA ATTAAGTCAG GTACAGTGGG ATAATGGTAA TGATTATTTC
CCGGCGACCA GTTTTCAACT GTCTAATATT AATGCGGGTA CTGGTGCAAC AAATGTTGTT
CCTGGGCATA TCAACGCCTT ATTTAACTTA CGTTATAGCA CTGAATTAAC TGATCAAATT
ATTGTTGAAC AAGTAGAGTC TATTCTTGAT AAACATCAAC TTGATTATGA TATAAAGTGG
ACTTTTAATG GTAAGCCATT TATCACAGAA CATGTTGAAT CAGAACATGG ATTTTTGAAC
GCCGTAAGCC AAGCAATACT TTCAGTTACC GGTACAGAAA CTCAGTTATC CACTTCAGGT
GGTACCTCCG ATGGTCGATT CATTGCGCCA ACGGGGGCAC AAGTCATTGA ACTTGGACCA
TGTAACGCAA CTATCCACCA AGTAAATGAA TCTGTTTCAT GTGATGATTT AGAAAAGCTC
GTTGATATTT ATTATCATTG TTTGGTTAAT GTTTTATGTA CGCATAAAAC CATTAGTTAG
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| Protein sequence | MSKIEQKNQS EVIKLAIDLM SRASVTPEDA GCQKLMAQRL AQLGFTNESM IFADTTNLWS
RRDSTNATKE DDLVFCFAGH TDVVPAGNLE LWNTPPFEPT IIDGMLYGRG AADMKGSLAA
MIVATERFVQ DHPDHHGSIT YLITSDEEGP FINGTTKVID TLEARNEKIT YCIVGEPSST
HAVGDIVKNG RRGSISAEVD IKGKQGHVAY PDHVRNPIHL AMPALTELSQ VQWDNGNDYF
PATSFQLSNI NAGTGATNVV PGHINALFNL RYSTELTDQI IVEQVESILD KHQLDYDIKW
TFNGKPFITE HVESEHGFLN AVSQAILSVT GTETQLSTSG GTSDGRFIAP TGAQVIELGP
CNATIHQVNE SVSCDDLEKL VDIYYHCLVN VLCTHKTIS
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