Gene CPS_3142 details

Gene Information

• Locus tag: CPS_3142
• ID: 3523031
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 3273120
• End bp: 3273776
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637285592
• Product: amino acid transporter LysE
• Protein accession: YP_269839
• Protein GI: 71282556
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.142315
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATATTA GTTTATTTGG TATTTTCGTA ACGGTTGCTA TAGCGCATTT TCTTGCGTTG 
TTAAGTCCTG GACCAGATTT CGTGCTCGTT GTAAAAAGCG CAATCAGAAA CGAAGGTAAA 
AATGCTATTG GTGTTGCGCT GGGTATATCA TCTGCTAACG CATTATATAT TGGGTTGTGT 
TTGATTGGTG TCGGTTCGAT TTTAGCCGCC TCAGTAACGA TAATGGTGGT ACTAAAAATT 
ATTGGAGGGC TGTTTCTAAT TTATCTAGCG GTGCAAGCTT TACGTGCTAG TAAAAGCTCA 
TACAACAACT TTGCGTTGTC TGAATCGACT AACGATACTT CCAATAAATC AACGTTTTTA 
AAGGAGTTCA TTACTGGATT TATGTCTGGA ATATTAAATC CAAAGAATTT ATTATTTTAC 
CTCAGCCTAT TTACCGTTGT TCTCACTCCT GACGTAGGTT TTGCTTTTAA GTTGGGATTA 
GGTATTTGGA TGACCGTGGT TGTATTTTTA TGGGACTTAG CCATTATTTA TCTGCTTTCA 
ACACGAACTA TACGATCAAG ATTTACCAAA GCCGCCTATT ACATTGATAA GGTTACGGGT 
GCATTATTAG GCCTTATTGG TTTGGCTATT GTAAAATCAG CGTTAGTGAA ACAGTAG 

 

Protein sequence

MDISLFGIFV TVAIAHFLAL LSPGPDFVLV VKSAIRNEGK NAIGVALGIS SANALYIGLC 
LIGVGSILAA SVTIMVVLKI IGGLFLIYLA VQALRASKSS YNNFALSEST NDTSNKSTFL 
KEFITGFMSG ILNPKNLLFY LSLFTVVLTP DVGFAFKLGL GIWMTVVVFL WDLAIIYLLS 
TRTIRSRFTK AAYYIDKVTG ALLGLIGLAI VKSALVKQ