| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3089 |
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| Symbol | |
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| ID | 3522559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3220072 |
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| End bp | 3222648 |
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| Gene Length | 2577 bp |
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| Protein Length | 858 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637285540 |
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| Product | sensory box protein |
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| Protein accession | YP_269787 |
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| Protein GI | 71282087 |
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| COG category | [R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0517] FOG: CBS domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.168178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTAG ATTTTATAGG AAGGGATATT TTGTTACATA CTAAAACACC AGAGCTTAAC
TTAATAGTTA AAGATATTAT GCAATCTAGT ATCTTAACGT GTTCGCCTGA GACAAAGATT
AATGTTGCTG CTAGTCGTAT GAGAGCACGT AATATCAGCT CAATTATCAT TAAAAGTAAC
CTTACGCTTG GTATATGGAC TGAATCAGAT TGCCGTAAAA TTGATTTTAG CGATCAAGAA
CAATTTAATG TAAGCATTAG CGAGTTAATG AACTCACCTG TGCTAACTAT TAAGCAAGAT
ATTCAGGTTA ATGAGTTAGC GATTAAGTTT AGACATTACG GCGTTAGACA CTTTATTGTC
GTTGATGCTG ATAACCTCCC TGTGGGTATC GTCAGCCAAA CGGATGTCAT TAAAAACCAG
GGGATAGAGC ATTATTTACA AGCAAAACTT GTAGCAAGCA GCTATAAAAA AAACCAACAA
TTACTGCAAC ATGATTGCCG CTTAGACAAT GTAGCTGAGC AAATGAAAAA GTATGAGTGC
TCATCTACAC TCATTTTCAA CAGTGAATTA GGGCAATACG GCATTGTCAC CGAACGCGAT
TTACTGAGCC TGCTTGCACG GGGTGAATGT ACTAAAAAGA CCGCTTGGCA TCATGCACAT
TACCCATTAA AAACTATCAA TGCTGACCAT TCCTTATATT CAGCTTACCA GCAATTAATC
AGTCACAATA TTCGTCACTT GGCGGTGTCT GATGATAATG GTGCCATCAT TGGTACTTTA
TCAATGGACA ACATTATGTC TGATATTGAA TTGGCTTATG TTGAAGAGTT ACATCAAATA
GTTCAACAAA GAGATATCGC CCTTAGAGAA TCAAAAAAAC ACTTGTTGGT GGCTGAGAAA
ATTATAGAAG CCTCTTTAGA TGGCATTATG ATCACCGATG AACAGGGGAC AATAATCTCA
GTTAATCCGG CATTTACTCG CGTGACAGGC TATAAAGAAG CGGAAGTGTT AGGGCTGAAT
TCAAAGATAT TGAGCTCAGG TAGACATACT AGTGACTTTT ATCAACAGCT GTGGTTGTGT
ATTTTAGAAC AGGGTGTGTG GCAGGGAGAA ATTTGGAATA AACGCAAGAA TTCTGAAATT
TATCCTCAAT GGTTAACTAT TATCGAGATT AGTGAAGGTG TTGACAACAA TAAAGTATTT
GCCGCTATTT TTAGCGATAT TAGTGAAAGA AAACTTGCTG AGAAGCGCAT TGAAAATTTA
GCTTTTTATG ATGAACTTAC TCAATTACCT AATCGTAGGC TCTTTTTTGA TCGTGTTGAT
ATGGCGTTAG CAATAGCACA TCGAAAAAAT AATAAAATGG CTCTATTTTT CATTGATTTA
GATTATTTCA AAGAAGTTAA TGACAATTAC GGTCATCGGA TTGGCGATTT GTTATTACGA
AGTTTCGCTA AGCGTTTGAC TGAAAGTTCA AAAGAAGGGG ATACAGTTGC TCGTATTGGC
GGCGATGAAT TTACCTTATT GCTAACAGAT ATGCGTGAAG TCGACCATAT TTGTAAAGCC
TGTAATCGAA TCGTTGAAAA ACTGCGTCAG CCTTATCATA TAGAGGGTCA TGCACTTAAT
ATAACAACCT CTATTGGTAT CGCCGTTTAT CCTGAAGATG GGACAAACGA AGAAGAGCTG
ATGAAAAATG CTGATATCGC TATGTATCGT GCTAAAGATA TTGGTCGTAA TTCATTTCAA
TTATTTACAC CGGCGATGAA TGCTCATTCA CAAGAACGGT CGTTAATACA AAGTCACTTA
CGTTTAGCAT TAGTTCACAA TGAATTGGAA CTGAATTATC AAGCTCAAAT CCATGGTGTT
ACCGGTAAAG TCATGGGCGT AGAGGCTTTA TTACGCTGGT ATAATCCTAT TCTTGGGCAA
GTATCACCTG CACAGTTTAT TCCTATGGCT GAAGAACTTG GTTTTATTGC TGAAATTGAC
CATTGGGTTT TAGAACATGC CTGTAAACAA CGAAAATTGT GGTTAGATCA GGGGCTTGAT
TGTGGTCGAA TAGCGGTAAA TATTTCAGCA TTACATTTTC ATCAAGGTAA CCTTGTCGCT
TCAGTTGAAT CGGTGCTAGC TCAAAGTCAA TTGCCGGCAG AGTTATTAGA GGTTGAAATA
ACTGAAGGCT GCTTCATTAA GCAAATGGAT AAAGCGACTA GTATATTAAA ACAACTTAAA
AAGATGGGCG TTAAAGTTGC CTTAGATGAC TTTGGTACCG GCTTTTCATC ATTAAGCTAC
TTAACAAGTT TACCTATTGA TACTCTTAAA ATTGATGCGA GTTTTATTGC TAAATTACCG
CATAATTTTA GAGAGAGCCA AATAACATCG GCAATTATCA CCTTAGCGCA AAACCTTAAT
TTAGATATTG TGGCTGAAGG CGTTGAAACT GAGGCACAAA AGATTTTCTT GATCGAGCGA
GGTTGCGAAA TTATGCAAGG ATATTTTTAT AATAAACCTG TATGTGCGAA AAATTTACCT
AGGGTAATTC AATCTTCGCA GTGTGGGAAA ATAGTAAAAC CTCAATCATC AGAATAG
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| Protein sequence | MNLDFIGRDI LLHTKTPELN LIVKDIMQSS ILTCSPETKI NVAASRMRAR NISSIIIKSN
LTLGIWTESD CRKIDFSDQE QFNVSISELM NSPVLTIKQD IQVNELAIKF RHYGVRHFIV
VDADNLPVGI VSQTDVIKNQ GIEHYLQAKL VASSYKKNQQ LLQHDCRLDN VAEQMKKYEC
SSTLIFNSEL GQYGIVTERD LLSLLARGEC TKKTAWHHAH YPLKTINADH SLYSAYQQLI
SHNIRHLAVS DDNGAIIGTL SMDNIMSDIE LAYVEELHQI VQQRDIALRE SKKHLLVAEK
IIEASLDGIM ITDEQGTIIS VNPAFTRVTG YKEAEVLGLN SKILSSGRHT SDFYQQLWLC
ILEQGVWQGE IWNKRKNSEI YPQWLTIIEI SEGVDNNKVF AAIFSDISER KLAEKRIENL
AFYDELTQLP NRRLFFDRVD MALAIAHRKN NKMALFFIDL DYFKEVNDNY GHRIGDLLLR
SFAKRLTESS KEGDTVARIG GDEFTLLLTD MREVDHICKA CNRIVEKLRQ PYHIEGHALN
ITTSIGIAVY PEDGTNEEEL MKNADIAMYR AKDIGRNSFQ LFTPAMNAHS QERSLIQSHL
RLALVHNELE LNYQAQIHGV TGKVMGVEAL LRWYNPILGQ VSPAQFIPMA EELGFIAEID
HWVLEHACKQ RKLWLDQGLD CGRIAVNISA LHFHQGNLVA SVESVLAQSQ LPAELLEVEI
TEGCFIKQMD KATSILKQLK KMGVKVALDD FGTGFSSLSY LTSLPIDTLK IDASFIAKLP
HNFRESQITS AIITLAQNLN LDIVAEGVET EAQKIFLIER GCEIMQGYFY NKPVCAKNLP
RVIQSSQCGK IVKPQSSE
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