| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3026 |
|---|
| Symbol | ptrB1 |
|---|
| ID | 3518461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3164187 |
|---|
| End bp | 3166301 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637285478 |
|---|
| Product | protease II |
|---|
| Protein accession | YP_269725 |
|---|
| Protein GI | 71279020 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1770] Protease II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCAACAT CTTCAGTTAC ATCAGATACG TCAAACAAAA ACATTACCGC ACCAATAGCT
AAAAAAATCC CTCATAAAAT GGAAATTCAT AATCATCATC GTGTGGATAA TTATTATTGG
ATGCGTGATG ACCAGCGTAG CGATGAAGCA GTATTGAAAC ACCTAAATGA TGAAAATAAC
TATGCTGATG CTATGTTAGC CGAGCAAAAA TCGTTACAAG AGTCATTATT TGAAGAGCTT
AAAGCCCGTA TCGTAAAAGA CGATAATACC GTGCCTGAAA AAGATGGTAA ATATTGGTAT
CACAGCGAAA TTAATGGTGA ACAAGAGTAT TCAAATTATT ACCGTTCAAC CAGCTTTACT
GGTGAAAACA AAACTCTGTT ATTAGATGTT AATGACCGAG CCAAAGACCA TGAGTTTTAT
GATTTAGGGG ATTTATCCAT CAGCCCTAAT GATCAATTAA TGACAATATC AGAAGACATT
GACAGTCGTC GTATTTACAC CATTTACTTT AAAGACCTGA ACAAATCATC TGACTCTGAC
GACCCTTATT TACCCGATAC GCTCATTGAA ACTGAAGGAC AAATTGTTTG GGCTAATGAC
AATAAAACCG TATTTTATGT AAAGAAAGAC TTAGAGACCT TATTAGGTAC GCAAGTTTAC
CGTCATAAAT TAGGCTCGCC ACAATCTGAT GATGTTCTTG TTTATGAAGA AGACGATTAC
AGTTTTTACA TGAGTTTAGA TAAGAGCAGA GATGACTCTC AAATTTATAT TTGTTTACAT
GCCACTGAAT CAACACATTA TTTAGCACTC AGTGCTGATG AGCCTGATGG TGAGTTTGAT
GAGCTCTTTC CGTATCAAGA ACAACACGAA TACCATGCGG ATAAAATGGG TGAACACTTT
TATATTGTGA CCAATTTTCA AGCTAAAAAC TTTAAGTTAA TGAAAGCTGC TATCAGTCAG
GTTCATGATA TAAATAACTG GCAAGAAGTG ATCCCTCACA GAAAAGATGT ATTGCTAGAG
GGTATTGAAT TATTCCAAAA CTTTACTGTG GTGACCGAAC GTGAACATGG CCAAATTCGT
TTTATTGTTC ACACTACACA GGGTGAAAAT GCAGGCCATC AATACCCTTT GTCTTTTGAT
GACCCGTGTT ATTTTGCTTG CCTTGGTGAT AACCCTGAGC CCAAAAGTAC CACCGCAAGA
TTATATTATT CAAGTTTAAC AACACCTGGA TCTTTATTTG AGTTTGACTT AGCTACCGGT
GAGCGAAAGC TGCTTAAACA GCAAAAAGTC TTAGGTGACT TTACCAAAGA AGATTATCAA
TCCGAGCGTT TGTTTATTAC TGCCCGTGAT GGCACAGAAG TACCTGTATC CATTGTTTAT
CGCAGTGATA CTTTTCAAAA GGATGGCTCT AACCCACTAT TGCAATACGG TTATGGTGCG
TATGGCATTA CCATAGACCC TGACTTTTCC AGTCAAACGT TAAGCTTACT CGACCGAGGT
TTTGTTTACG TTATCGCCCA TGTTCGTGGC TCAGAAATGT TAGGAAGAGA ATGGTATGAA
ACCGGTAAAA TGGCGCATAA ACAAAATACC TTTAATGATT TCATTGATGT TACTAAAGCC
CTAGTTGAAC AAGGTTATGG GGCTAAAGAT AAAATATTTG CTTCTGGCGG CAGTGCCGGC
GGTTTATTAA TGGGAGCTGT GGTCAATCAA GCACCTGAAC TATATTTAGG TATTGGCGCA
CATGTGCCCT TTTTAGATGT ATTAACGACT ATGCTCGATG AAAGCATACC GCTAACCACC
AATGAATATA ACGAATGGGG TAACCCGAAC GAAGCACAGG CTTATCAAAG TATTTTAGCT
TATTCGCCCA TTGATAATAT TAGTGCTCAA CACTACCCTC ATATACTTGT CACCACGGGG
TTGCACGACT CACAAGTGCA ATACTTTGAA CCAATGAAAT GGGTAGCAAA AATGCGTGAG
TTTAAAACAG ATGACAACTT GTTGTTATTT AAAACAGATA TGGAGGCCGG CCATGGTGGC
GCCTCGGGAC GTTTTAAAAG TTTAAAAGAA AAAGCCTTGG AGATGAGCTT TTTTATCTCA
TTATTACCAA AGTAG
|
|---|
| Protein sequence | MPTSSVTSDT SNKNITAPIA KKIPHKMEIH NHHRVDNYYW MRDDQRSDEA VLKHLNDENN
YADAMLAEQK SLQESLFEEL KARIVKDDNT VPEKDGKYWY HSEINGEQEY SNYYRSTSFT
GENKTLLLDV NDRAKDHEFY DLGDLSISPN DQLMTISEDI DSRRIYTIYF KDLNKSSDSD
DPYLPDTLIE TEGQIVWAND NKTVFYVKKD LETLLGTQVY RHKLGSPQSD DVLVYEEDDY
SFYMSLDKSR DDSQIYICLH ATESTHYLAL SADEPDGEFD ELFPYQEQHE YHADKMGEHF
YIVTNFQAKN FKLMKAAISQ VHDINNWQEV IPHRKDVLLE GIELFQNFTV VTEREHGQIR
FIVHTTQGEN AGHQYPLSFD DPCYFACLGD NPEPKSTTAR LYYSSLTTPG SLFEFDLATG
ERKLLKQQKV LGDFTKEDYQ SERLFITARD GTEVPVSIVY RSDTFQKDGS NPLLQYGYGA
YGITIDPDFS SQTLSLLDRG FVYVIAHVRG SEMLGREWYE TGKMAHKQNT FNDFIDVTKA
LVEQGYGAKD KIFASGGSAG GLLMGAVVNQ APELYLGIGA HVPFLDVLTT MLDESIPLTT
NEYNEWGNPN EAQAYQSILA YSPIDNISAQ HYPHILVTTG LHDSQVQYFE PMKWVAKMRE
FKTDDNLLLF KTDMEAGHGG ASGRFKSLKE KALEMSFFIS LLPK
|
|---|
| |