| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2895 |
|---|
| Symbol | cspD |
|---|
| ID | 3518797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3028752 |
|---|
| End bp | 3028970 |
|---|
| Gene Length | 219 bp |
|---|
| Protein Length | 72 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285348 |
|---|
| Product | cold shock-like protein CspD |
|---|
| Protein accession | YP_269596 |
|---|
| Protein GI | 71278580 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00549014 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACG GTACAGTTAA ATGGTTTAAT AATGCGAAAG GTTTTGGCTT TATTCGCCCG
GATAGTGGCG GAGAAGATAT TTTCGCACAC TATTCAACTA TTGAGATGGA TGGATATCGA
ACATTAAAAG CAGGACAGGA TGTCGATTAC GAACTAAATG ATGGCCCTAA AGGTCATCAT
GCAGCAAGTA TCAAATTAGC TGATGGCGAA CTAGAATAA
|
|---|
| Protein sequence | MAHGTVKWFN NAKGFGFIRP DSGGEDIFAH YSTIEMDGYR TLKAGQDVDY ELNDGPKGHH
AASIKLADGE LE
|
|---|
| |