| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2867 |
|---|
| Symbol | |
|---|
| ID | 3519409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2996237 |
|---|
| End bp | 2999437 |
|---|
| Gene Length | 3201 bp |
|---|
| Protein Length | 1066 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637285320 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_269572 |
|---|
| Protein GI | 71279090 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.212232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATA AAATGATTGA TTGGTCGATC AATAATCGAC TCTTAGTAAT TATCGCCCTG
ATTGCCACGA TGGCAGCTTC TATTATGGTG ATCCCAAAAC TAAATTTAGA TGCTTTTCCT
GATGTAACAA ATGTTCAAGT AGCGGTAAAC ACAGAAGCAC CGGGCTTGGC AGCAGAAGAA
GTAGAGCAGT TAATAACCTA TCCCATTGAA GCGGTAATGT ATGCGTTGCC TGATGTAGAG
CAAGTACGCT CTATTTCAAA AACGGGTTTA TCGGGTGTTA CTGTTGTCTT TAAAGAAGGT
ACAGATATCT ACTTTGCTCG CCAGTTAGTA TTTGAGCGTT TACAAGCGGC AAAAGAGTTA
ATTCCTCAAG GCGTGGGCAC ACCAGCAATG GGACCAAACA CCTCAGGTTT GGGTCAAGTT
TTTCAGTATT TGTTAATTGC AGATAAAGAT TCTGGTTATG ATTCTATGAC CTTAAGAAGT
TTGAACGATT GGATAGTAAA GTTATTGGTT ATGCCAGTAG ATGGTGTTAC CGACGTCTTA
TCTTTTGGCG GCAATGTCAG ACAGTATCAG GTCAACATTG AACCCAGTAA ATTATTGTCA
TATGAATTAA CGCAAGACGA TATTGTTACC GCACTCGATA ACAATAATGC CAATGTTGGC
GGTTGGTACA TGAACCGTGG GCAAGAGCAG TTAGTTATTC GTGGCACAGG TTGGTTTAAT
AGTGGCGAAG CAGGTTTAGC TGATATCAGA CAAGTACCGG TTAAAACGGT TGATGGTACT
GTGGTGACTA TCGATGATGT GGCTAACGTT GCATTAGGTA GTGAAATACG CCAAGGCGCG
GTTACTATGA CGCGCAGAGA TGCACAAGGT AACATTGAAA ACTTAGGTGA AGTGGTTTCA
GGCATAGTAT TGAAACGAAT GGGCGCAAAT ACTAAAGCAA CAATTGACGG TATCAATGCA
CGTATTCCTA TGATCAACCA AGCACTACCT GAAGGGGTAC GTTTTGAACC TTTCTACGAC
CAAGCAGATT TAATTACTAA AGCGGTTGAT ACCGTAGTAG AAGCATTAGC GCTCGCATTT
ATATTTATCG CTATCGTACT TGCACTGTTT TTAATGAACT TGCGCGCAAC CTTTTTAGTG
TTAATTTCAA TTCCTATTTC AATCGCTATT GCCTTAATGG TGATGTCTTG GATGGGTTTA
TCGGCAAACT TAATGTCATT AGGTGGTATC GCCGTTGCTA TTGGTATGTT GGTTGATGGC
TCTGTTGTGA TGGTTGAAAA CATGTTCAAA CATCTAAATA GACCAGATTC AACACATTAT
AAAAATGCTC AAGCGAGAAC GTTAGGCACA GATGCTGATC CCCATGATGT TGAACACGAT
GAAGAGGGTA TTCCTCTACG ATTAAAAGAA GCAGGGAAAG AAGTCGCACG TCCGGTATTT
TTTGCTGCCT CTATTATTTT AGTGGTCTTT ACCCCGTTAT TTAGCTTTGA AGGGGTGGAA
GCTAAACTGT TCCAGCCGAT GGCTATCAGT ATTATTTTAG CGGTTATTTC AGCTATTTTA
GTGGCACTGT TCGTGGTACC AGCCTTAGCA ACTTTTATGT TCAAAAAAGG TGTTAAAGAA
AAAGAAAGTT TTGTCTTAAA ACCATTAGAT AAGCTGTATC GCAAAGGCCT CAAAGCCGCG
ATGAAACACA CGAAAGTAGT CATTATTGCT TCATTGTTGT TACTCGTAGG AGCAGCATCT
TTAATACCAC AAATAGGGAC TGAATTTGTA CCAGAATTAG AAGAGGGCAC TATTAACTTA
AGAGCAACAT TAGCGCCATC AGCAAGTTTA GAAACAGCTT TATCGGTTGC ACCTATCCTT
GAACAAAAGT TAATGGAGTT CCCAGAAGTA GAATATACCC TAAGTCGAAT TGGTCGTGCT
GAAATTGGCG GTGATCCTGA GCCAGTCAAT AACATCGAAA TATACATTGG TTTAAAACCT
GTTTCACAAT GGTCTAGTGC CGAAAACCGT GTTGAGTTAC AAGGTTTAAT GGAAGAGGAA
CTTGAACAAT TCCCAGGGTT ATTACTTAAC TTTTCACAAC CCATAGCGAC ACGCGTTGAT
GAATTACTGT CAGGTGTTAA AGCGCAACTT GCCATTAAAT TGTTTGGACC AGAATTGGAT
ATGCTGGCGA GCAAAGGTCA AGAAATTGAA GCGGCAATCA AACAAATTGA TGGCGCGCGA
GATGTGGCTT TAGAGCAAAT CGCTGGTGAA GCACAGTTAG TGATTAAACC GAAAAGACAG
CAATTGTCAC GTTTTGGTTT GTCGGTTGGT GATGTCATGG AAGTGGTTAA AAATGGTATT
GGTGGCGTTA GCGCTGGCCA AATAATCAAT GGTAATGAAC GTTACGATAT TTATGTTCGC
ATTGAAGAAA AATACCGTGA TAACCAAGAA GCTATTGCAG ACCTTAGAAT ACAATCACCT
ACAGGTGCTT GGGTACGTTT AGGCGATATT GCTACCGTCA GTTTTGAATC CGGCCCACCA
CAAGTGCGCC GTGATGATGT ACAGCGACGC GTGGTAATTC AAGCCAATGT TCAAGGTCGA
GACATGGGGA GTGTTGTTAG CGATATTCGC GCAGTTATTG ATAGCAAAGT AGACTTACCT
GCAGGTTATT CTGTAGTGAT CGGAGGTCAG TTTGAAAACC AACAACGCGC CCAGCAGCGA
CTAGCAGTAG TGGTGCCTCT ATCATTAGCG TTAATTGCCT TACTACTTTA CTTTGCCTTT
GGCTCTGTTG GTCAAGCGAT GCTTATTTTA GTGAATGTAC CGTTAGCTGT TATTGGTGGT
ATTTTCTCAC TGTATATTTC AGGTCAATAC TTGTCAGTAC CAAGTTCAGT CGGCTTTATC
ACCCTATTTG GTGTCGCCGT GCTTAATGGT GTAGTAATGG TAGAAAGCAT TAACCAGCTG
GTAAAAGATG GTTTAGATAC CTCAAAAGCT GTTTTTGACG GGGCAGTATC TCGTTTACGT
CCAGTATTAA TGACCGCCAT TACTTCTGCG TTAGGTTTGA TCCCAATGCT GATGTCCAAT
GGTGTTGGCG CTGAAATTCA ACGACCTCTG GCGAGTGTGA TTGTTGGCGG TTTGGTTACC
GCGACATTAC TTACCTTATT TGTATTACCG GTTTTATATG CTTGGTTCTC AAAAGCCAAA
ATCAAAGATC TTAGAGGATA A
|
|---|
| Protein sequence | MFNKMIDWSI NNRLLVIIAL IATMAASIMV IPKLNLDAFP DVTNVQVAVN TEAPGLAAEE
VEQLITYPIE AVMYALPDVE QVRSISKTGL SGVTVVFKEG TDIYFARQLV FERLQAAKEL
IPQGVGTPAM GPNTSGLGQV FQYLLIADKD SGYDSMTLRS LNDWIVKLLV MPVDGVTDVL
SFGGNVRQYQ VNIEPSKLLS YELTQDDIVT ALDNNNANVG GWYMNRGQEQ LVIRGTGWFN
SGEAGLADIR QVPVKTVDGT VVTIDDVANV ALGSEIRQGA VTMTRRDAQG NIENLGEVVS
GIVLKRMGAN TKATIDGINA RIPMINQALP EGVRFEPFYD QADLITKAVD TVVEALALAF
IFIAIVLALF LMNLRATFLV LISIPISIAI ALMVMSWMGL SANLMSLGGI AVAIGMLVDG
SVVMVENMFK HLNRPDSTHY KNAQARTLGT DADPHDVEHD EEGIPLRLKE AGKEVARPVF
FAASIILVVF TPLFSFEGVE AKLFQPMAIS IILAVISAIL VALFVVPALA TFMFKKGVKE
KESFVLKPLD KLYRKGLKAA MKHTKVVIIA SLLLLVGAAS LIPQIGTEFV PELEEGTINL
RATLAPSASL ETALSVAPIL EQKLMEFPEV EYTLSRIGRA EIGGDPEPVN NIEIYIGLKP
VSQWSSAENR VELQGLMEEE LEQFPGLLLN FSQPIATRVD ELLSGVKAQL AIKLFGPELD
MLASKGQEIE AAIKQIDGAR DVALEQIAGE AQLVIKPKRQ QLSRFGLSVG DVMEVVKNGI
GGVSAGQIIN GNERYDIYVR IEEKYRDNQE AIADLRIQSP TGAWVRLGDI ATVSFESGPP
QVRRDDVQRR VVIQANVQGR DMGSVVSDIR AVIDSKVDLP AGYSVVIGGQ FENQQRAQQR
LAVVVPLSLA LIALLLYFAF GSVGQAMLIL VNVPLAVIGG IFSLYISGQY LSVPSSVGFI
TLFGVAVLNG VVMVESINQL VKDGLDTSKA VFDGAVSRLR PVLMTAITSA LGLIPMLMSN
GVGAEIQRPL ASVIVGGLVT ATLLTLFVLP VLYAWFSKAK IKDLRG
|
|---|
| |