Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2768 |
Symbol | recB |
ID | 3520210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 2883240 |
End bp | 2887100 |
Gene Length | 3861 bp |
Protein Length | 1286 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637285221 |
Product | exodeoxyribonuclease V, beta subunit |
Protein accession | YP_269480 |
Protein GI | 71279749 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAAT TTGATACTTC AGACTCTCAA CAAACAGCGA CTAAAGATAA TCATCAAGAA GTAACACTAC AAAATCTTGA TGCAGCGACC ATTGAGTTAA CGGGTAAACA TCTTATTGAA GCCAGTGCTG GTACAGGTAA AACCTATAAT ATTACGCGTA TTTATCTACG CTTATTACTT GAACGTGAGT TAACGGTTGA ACAAATATTG TTAATGACGT TTACCAAAGA TGCGACTCAA GAATTACGAG GGCGAATTGA TGCTTTTATT CGTTTAGCCC TCAGTGACTG GGATAGTTTG TGTTTAAAAG ACGCTTACTT TGCCACACTT GCTCAACGTA TTGAAAAAAA ACAGCGAGAA TTTTTACTCA AACGCGCACT ACTGTTTTTA GATGAAGCAG CTATTTTTAC TATTCATGGT TTTTGTCAGC GGGTATTAAA TCAATATGCG TTTACCAGTG GTTTACCGTT CAATGCCAAT ATGGCAGCCA ATTCGTCTGA AATAACTCTA CAAGTTTGCC AAGATTGGTA TCGCAGTTTA GCTAAGTCTG ATCATGAGTG TTTTATGTTG CTAGCAAGTT ATTGGGCAAC ACCAGATAGC TTTTTATCCA GTTTTAGTAA AGCCATAGGT CACACCAGCA CTTTATCCGT TGTGGATGTC GAAAGTATTG AGGCTGAATT TATTGTCTTA GTACGTCTGG CAGCGCAAAC ATTAACGGCC AACAGTGATT TATTTGAAAA TGGCTTAATA CTGGTTAAAA AGGGCGCAGA CCAAGAAAAA AGACGCGATG AGTTGTCTCA ATTAAAAATC TGGCTTGAGA GCATTATCAG CAAAGAGTTA TCACTGCTTG ATGTTGGCGA GGGTAAGGTA AAAATGCCAG ATGGTTTTTT TGATGGCAAA CGTTATGCAA GATCGACCTA TAAAGCTGAG TTACTAGAAG CTTTTGCGCC GGTAAAAGAA GTTAAAGAAC AAGTTAAGAA AATAGCGAAC AATATCAACA AAGCTAGAGC GTACGGCATT GTTAAGTCTG GTATTTACAT TATTAGACAG CAAGTCATTG AGCAGAAAAA AGCACTTAAT TTATTAGACT TTGACGATCT TATTAATACA TTAGCTAATT GTCTTCAGTC GGATAGCTCA GGTGATGAAC ATTCTCAGTT ACTCGCTAAA CAGCTACTCG CACAATACCC TGTAGCCTTA ATAGATGAGT TTCAAGATAC TGACCCTAAG CAATTCGGCA TATTACAATC GATCTATTAC GGCGACAATG CTAAAAAAGC TAATGCCGGT TTATTCCTTA TTGGCGATCC AAAGCAGGCT ATTTATGGTT TTCGTGGTGG TGATATTTTT GCCTATCTCA ATGCACGTAG CGGCTGCGAC CACCACTGGC TGATGGATAC TAATTGGCGT TCAACGCCAC AAATGATTGA AGGTTATAAC CAGTTTTTTA CCTACAAACG TAATGGGTCT TCATCTGAAG AAACGGTGTC TAACGAAGTA AATAAGCAAC AAAGTGAGAG TGTCTTTGGT TTTGGCATAC CTTATTTACC AGTACTAGCA GGAAAGAAAT CGGCCCAAGC CCAACAAGTT ATCTTAGACA GTGATAAAGC ACTGCAATTT ATTCATTTTA CTAATGATGA AACATCCAAT GATACTAACC CGCAAGGTGA CAAAGTTAGT CAAGGTAGTC GTCCTATGTT GGCTAACTGG TGTGCGAATG AAATAGTGAC TCTGTTGGCC TCGAAAGAGC AAACAGGTAA AGTAAATCCA AAAGACATCG CCATACTTGT CAGAGATGGT GCTGAAGCGC GAGATATTAA ACATGCCCTG CAACAAGCGG GGCTTGATAG CGTTTTCTTA TCAGATAGAG CTAATTTATT TCATTCTCAG CAAGCTAAGC AATTATTAGG TTTACTCAAA GGGGTATTAT TACCTGAAAA TGAACGATTG TTTGTTGCCG CACTGTCATG TGGATTATTA GGTTTTGATG CTAAAAAGCT ACACCAATTA CAGCAAGACG AAATGGCTTA TCAAACGTTG AAGTTTGCTT TTGTTGATTA TAGAACGCAA TGGCAACGAC AAGGTTTTAT CACCATGGCG ATAAACTTGA TGCACAACTT GCTTGATGTT CCTCAAAACA ATAAAGATCG TTGTTTAACC AATGTGCTGC ATTTATTTGA GATATTACAA GCGGCTAGTG TTCGATTAAG TCAAGGACAA GAGCTTCTGC ATTGGTTTGA ACAGCAGTGT CACCTTGAAA CCAATGATGT TGAAGCCGAG CTACGTTTAG AGAGTGATGG TGATCTTATT CGTTTAATTA CTCAACATGG CTCTAAAGGA CTTGAATATC CTTATGTCTT TATTCCATTT GCTTGTCGTC ATAAAGATCC GTTGAAGTTT GGCAACAAGT CAGTGAGTTA TCTTGAATAC CACGATGCAA ACGGTAAGCT GTGTTTAAGT CTTGATGGCT CAAAAGAAGC CAAGAAAGCT ATGAGTAATG AAGCTTATGC CGAAAGTATC CGTTTGCTTT ATGTGGCGAT AACCAGAGCC GAACGAAGAT GTTACGTACT GTGTTGCGCC TTTGATGCAT ATCATCTATC ACCTTTAGGC AAAACACTGC AGTTTCAAGA ACAAGAGAGC ATCATTAAAC CGTTGCAAGT ACTTAAGGCA AGTGCTGAGC ACGCTATTGG TATTCGTGAA GTATCACTTG ATTGTTCTAT TGACCTTTAC CTTGAAAAAA ATGATGAAGC CGCGCTACAT CAACCGAAAA ATAGCCCACA AGAGTTTGCC AATACCGAAG TCAGTAAATT CATTGGTAAG ATAGAGCGAG ATTGGTGGTT GAGTTCATTT ACCGCCTTAA GCCGTAATAT CCGCCATGCA GGTGTTTCTA ATCCAGATAG AGATACTACT GACATAGCGA ACAGGCAATT AGATACTGAT TCCGAACATA CTGATATCGA ACTACTTAGC GCTGAGCAAA TTTGCTTTAA ATTATCCAAA GGTGCTCATA CGGGTAACTT ATTACACGAT ATTTTAGAGC AAACTGATTT TTCTGAACCA GATTGGCAAG AGAGTCTGGA AAAACCTTTA TTAGCCTATG GTGAGTTAAA CGCGAGTAAC GCTAACAGTA TAAGTACTTC ATTTACCTCA GATGATTTAA TTCAGTGGTT AGAACAAGTG ATTAGCGCAC CTTTCATTTC GAGTCACCAC AGTGCACTCA CTACCGATAG TGAAAATGCT GGCTGTCTAG CCGATATTGC TTTCAATAGA ACGCTACGTG AAAGTGAGTT TTATTTTCCT ATGCAAGGCG AGGGTACTAA CGCTTTAGCT AATTTGCTAA CCGATCACCG AAATAGGGCA GAGCGTACTG ATACTGGCAA TAGTATTAGT ACTGGTCGGA ATAGTGGGAT AAGCAAGACA TTAAACAACA CCTTAAAATA TCCAGTAATG TTACCTAGCT ATAAAAAGCT CTCAGGCATG ATGCATGGTT TTATCGATTT GATCTTTGAA TACCAAGGGA AATATTATCT GTGTGATTAT AAATCTAGTC ACTTAGGTGA TAGCTTTCAA GATTATCAGT TTGATGCATT GCTCGATAAT GTTGAGAAAA ATTATTATGA CTTACAATAC TTAATTTACT CATTAGCATT ACATCGTTAT TTAAAACAAA CTTTGGTAGA TTATGATGTT AATCAGCATT TTGGTGGTGT GTATTATTTA TATCTACGTG GTATGACAAC TGAGCCTGAA CATAAAGGTG CAGGGGTTTA TTATCGAAAA ATTACAGAGC AAGAAATCAA TAATTTAGAT GCGCTCTTCT CTAATAAAGA AAGTAATGAA AAATGCAATG AGGAAGCGTA G
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Protein sequence | MTQFDTSDSQ QTATKDNHQE VTLQNLDAAT IELTGKHLIE ASAGTGKTYN ITRIYLRLLL ERELTVEQIL LMTFTKDATQ ELRGRIDAFI RLALSDWDSL CLKDAYFATL AQRIEKKQRE FLLKRALLFL DEAAIFTIHG FCQRVLNQYA FTSGLPFNAN MAANSSEITL QVCQDWYRSL AKSDHECFML LASYWATPDS FLSSFSKAIG HTSTLSVVDV ESIEAEFIVL VRLAAQTLTA NSDLFENGLI LVKKGADQEK RRDELSQLKI WLESIISKEL SLLDVGEGKV KMPDGFFDGK RYARSTYKAE LLEAFAPVKE VKEQVKKIAN NINKARAYGI VKSGIYIIRQ QVIEQKKALN LLDFDDLINT LANCLQSDSS GDEHSQLLAK QLLAQYPVAL IDEFQDTDPK QFGILQSIYY GDNAKKANAG LFLIGDPKQA IYGFRGGDIF AYLNARSGCD HHWLMDTNWR STPQMIEGYN QFFTYKRNGS SSEETVSNEV NKQQSESVFG FGIPYLPVLA GKKSAQAQQV ILDSDKALQF IHFTNDETSN DTNPQGDKVS QGSRPMLANW CANEIVTLLA SKEQTGKVNP KDIAILVRDG AEARDIKHAL QQAGLDSVFL SDRANLFHSQ QAKQLLGLLK GVLLPENERL FVAALSCGLL GFDAKKLHQL QQDEMAYQTL KFAFVDYRTQ WQRQGFITMA INLMHNLLDV PQNNKDRCLT NVLHLFEILQ AASVRLSQGQ ELLHWFEQQC HLETNDVEAE LRLESDGDLI RLITQHGSKG LEYPYVFIPF ACRHKDPLKF GNKSVSYLEY HDANGKLCLS LDGSKEAKKA MSNEAYAESI RLLYVAITRA ERRCYVLCCA FDAYHLSPLG KTLQFQEQES IIKPLQVLKA SAEHAIGIRE VSLDCSIDLY LEKNDEAALH QPKNSPQEFA NTEVSKFIGK IERDWWLSSF TALSRNIRHA GVSNPDRDTT DIANRQLDTD SEHTDIELLS AEQICFKLSK GAHTGNLLHD ILEQTDFSEP DWQESLEKPL LAYGELNASN ANSISTSFTS DDLIQWLEQV ISAPFISSHH SALTTDSENA GCLADIAFNR TLRESEFYFP MQGEGTNALA NLLTDHRNRA ERTDTGNSIS TGRNSGISKT LNNTLKYPVM LPSYKKLSGM MHGFIDLIFE YQGKYYLCDY KSSHLGDSFQ DYQFDALLDN VEKNYYDLQY LIYSLALHRY LKQTLVDYDV NQHFGGVYYL YLRGMTTEPE HKGAGVYYRK ITEQEINNLD ALFSNKESNE KCNEEA
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