| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2682 |
|---|
| Symbol | umuC2 |
|---|
| ID | 3518547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2790567 |
|---|
| End bp | 2791823 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285136 |
|---|
| Product | umuC protein |
|---|
| Protein accession | YP_269396 |
|---|
| Protein GI | 71278874 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.261647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATGCTT TAGTTGATGC AGTATCATTC TACGCAAGTG CTGAAAAAGT TTTTGACCCC
AGCATACGTA ATAAACCCGT TGTTGTTTTA ACTAATAATG ATGGTTGTAT CTGCGCTGTC
TGTCCGATTG CAAGACGCCT TGGTATTCCA AAATTTATAC CGTACTTTCA AGTTAAATCA
TTGCTTGAAA AGCATGGCGT GGTTGTTCGT TCTTCAAATT ATGAGTTGTA TGCGGATTTG
AGCGAACGAA TGATGAATGT CATCGGCCGC TTTTGTGATA ACCAGTATAT ATACAGCATT
GATGAGTCAT TTTTATATTT TGATCATTAT GAAAGCTGCA TAAATGATTG GCACGAATAT
GGACATAAAA TAAGAAAAGC CATTTGGAAA GAAACGAGAC TTCCCGTCGG TGTTGGTTTT
GGTGAAACAG CAACACTGTC AAAAGCGGCA AACCATGCAG CCAAAAAACT CTCTGGTTTT
AATGGTGTAG CCGTTATTAA TAGCGCAGTA AGCAGAGACA AAATACTCAA GCGCATGGCG
GTAGATGAGG TATGGGGCAT CGGGCGAAAA ATATCGAAAC GATTAGGGCT TGAGGGTATT
AACAACGCCG CGCAGTTAGC AGAGCAAGAT CCTAAACATA TACGAAAACA ATTTAGCGTA
GTAACTGAAA GAACCGTGAA TGAATTAAAC GGCATCAGTT GTTTGTCTTG GGATGAGGTG
AAATCACCCA AAAAAGAGAT TTTCTCAACA CGAAGTTTTG GACAGCGCAT TACCACAAAA
AATGAATTAC GCTCTGCGTT GGTAACACAT GCAGCCATTG TAGGAAGGAA AGTGAGAAGA
CAAAATTCAC TCATTAAAAA GTTAATGATA TTTGCCTCTA ACTCGCCGCA TGATGACTTG
TATTACAAGC AATCCATGGT TTTTCCATTT ATCATAGCGA CTGAAAATAC CTGTGAAATG
GCGCGCGCGG TAAACCAAGT TATTGATTCT ATATACAAAG CAGGAATAAA ATTTTACCGT
TGTGGTGTAG GTGCAATCGA ATTAAATAGT AAAACGTTTA TACAACCAGA CTTATTTATG
CCCGATCACA CTAATAGTAA CGTAATGAAA TGCTTAGATA ATGTGAACCA CAGATACGGA
GATAGCACCT TAAAGCTGGC CGCTGAAGGG CATCATGAAA AATGGCAAAT GCGACGAGCG
TTTTTAAGCC CTCAATACAC CAGTCAGTGG CGAGACATTC CTAAAATACA GTGCTAG
|
|---|
| Protein sequence | MYALVDAVSF YASAEKVFDP SIRNKPVVVL TNNDGCICAV CPIARRLGIP KFIPYFQVKS
LLEKHGVVVR SSNYELYADL SERMMNVIGR FCDNQYIYSI DESFLYFDHY ESCINDWHEY
GHKIRKAIWK ETRLPVGVGF GETATLSKAA NHAAKKLSGF NGVAVINSAV SRDKILKRMA
VDEVWGIGRK ISKRLGLEGI NNAAQLAEQD PKHIRKQFSV VTERTVNELN GISCLSWDEV
KSPKKEIFST RSFGQRITTK NELRSALVTH AAIVGRKVRR QNSLIKKLMI FASNSPHDDL
YYKQSMVFPF IIATENTCEM ARAVNQVIDS IYKAGIKFYR CGVGAIELNS KTFIQPDLFM
PDHTNSNVMK CLDNVNHRYG DSTLKLAAEG HHEKWQMRRA FLSPQYTSQW RDIPKIQC
|
|---|
| |