| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2607 |
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| Symbol | |
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| ID | 3522346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2707834 |
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| End bp | 2710998 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637285061 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_269322 |
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| Protein GI | 71281874 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.202674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTACTCG ATGTAAAATT TACTAAAAAC ACATGTACTA AGCTCATCGG CCTATGGCTT
AAGTTCTTTC TCTTCTATTC TTTGCTTCCT TTTTCAACCT CTGCTCAAGA GGCCTCTTTT
CGTTTCAAGA GATTAGGCCT TGAAGACGGT TTATCTCAAA TCAGTGTTAA TGGCATCGCC
CAAGATGTAA ATGGCTTTAT CTGGTTTGCT ACTCAAGATG GTTTGAACAA ATACGATGGC
TATCAAATAA CAACATATAG ACATCAACCT TCAGATCCTA ATAGTATTAT CAATAATCAT
ATACATTCTA TTTTTAAAGA TTCAAAGCAC AACTTATGGA TAGGTAGTTA TGGTGGTTTG
AGCAAATACG AACCAAAAAC AGACAATTTC ACTCATTATA ATTCACCATC ACTCAATGAC
TCGGATGGAA AAGTTGGTTA CATACAGTCA CTATTCGAAG ATTCTGATGG AGAGCTTTGG
CTATCATCCA ACATGGGGTT ATATCGATAC AGTATTGATA CAAACACTTA TATTTTATAT
CTACCTGACG ATAATAAGCC TAATAGCGTA ATTCATAGTG AAATAAAATC TATTGCTGAA
GATTCAATAG GGAATATTTG GATAGGAACA ACTATTGGAG TAAGTAAATA TAATAAACGC
AATAATACCT TTACTAATTA TCAACACTCT CCTGAAAATC CGCATAGTTT AAGTAATAAT
TTTGTATTGA AAATATATAA AGACTCCCAA AATAACTTAT GGTTTGGGAC TTTTGGTGGC
GGACTTGATA GATACGATAA TGATACAAGT AAATTTGTTC ACCATAGAAC AAACACACAA
AATAAAAATT CATTAGGTAA TAATTATATA CGAACAATTC TTGAAGACAG TGCAGGCATG
CTCTGGCTAG GCACTAACAA TGGTTTATAC GCTTTTGATT CAAGCAAACT CATATTCCAG
CGATTCAGAC ATTCCGTAAA TGACAGACAC AGCTTAAGCC ATGATGTCAT TTATTCATTA
TTTCAAGATA AAGATGGTTC ATTATGGGCA GGAACATTAG GCGGTGGAGT CAACCTATTT
AGGCCAAGTA CCAATGTCTT TAAACATTAT AAGTCAAACC CAAATAACCC AGAAAGTCTA
AATGCGAATA TGGTGTATGC GATCTATGAT GATGATGAAT ACGTTTGGGT AGGGACTTCT
GGTGGGGGAC TTAATAAGTT AAATAAAACC ACAGGGAAAT TTTCCAACTT CACGGAACCG
GAAACCAGCG TTGGTTTAGG TTTAAATAAG GTTAACTATA TTATCAAAGC TTCAGAAGCC
GAATTATGGT TAAGTACAAA TTCTGATGGC CTGCTAAAAT ATAATAAAAA TACGGGCAAC
ATTACTCAAT ACAAACATCA TCCAGACGAT AGAAATAGCC TGAGTAACAA TAGAGCACGA
GGCTTAGCTA TAGATAAAGA GGGTAACTTA TGGATTGGTA CCGCAGGGGG AGGCTTGAAT
AAGTTGGATC CTATTAGTGG TCAGTTTACC CATTTCATGC CCGATACAGA CAATCCAAAT
AGCATCAGTA CTAACTTTAT CCGATGTTTA CTTTATGACT CTAAAGGAAG ATTGTGGACT
GGCTCTTATG GCCAAGGCTT GAACCGATTC GATTTTGATA CGCAGACTTT TATTAACTTT
AACAAGGACT CTGTAAAAGA ACCAATACTG AGCAACAAAT TTATTCGCTC AATTTTCGAA
GATAAGTCAG GTAACATATG GGTCCTGACT AATGGTGGCA TTATTAAATA TGATGAAAGC
AAGGGCAGTT TCCACTCTTA CACCACTACC GATGGATTAC CGAGTAATGT CGTATATGGC
GCATTAGAAG ATCAAAAAAA CAATTTATGG TTAAGTACTA ACAATGGGCT AAGTAAATTC
AACCCTCAAA ACATAACATT TGAAAATTAT ACTAAAGAAG AGGGGATCCA GGAGAACGAA
TTTAATACGG GTTCATTCTT CAAAAATAAA ACGGGTGAAA TGTATTTTGG TGGCATAAAT
GGCTTCACTT TATTTCATCC TGATAAGATT AAAAAAGATA AAACAATCCC AACAGTTAGC
TTCACCAACT TATTACTTTA TAACGATGCA ATAGCAATTG GCGAGTCAGA GAGATTTTCT
AGTCATATAA GCTCAACTAA TGCGTTGAAT TTCGCTCACA ATGATGACGT TATCACCTTC
GAATTTTCAG CATTAAGTTA CTCCCAAGCA AATAACATCT CTTATAGATA CCAATTGCAA
GGATTCAGTG ATAACTGGAT AGAAACGGAT CATAACCACA GAAGAGCTAC CTTCACCAAC
TTGTCCAAAG GTGATTATAT TCTCAAGGTT AAAGCATCGA ACAGAAATCG GAGCTGGGGA
GAGGAAACCA CGGATTTAAG AATAACTATT GCAGCAGCAT ACTGGGAAAC AACGTGGTTC
AGAGGATTGT TACTCGCTAT AGGATTTATA GTGTTCGTTA TTGCAATTAA ATGGAGAGAA
AAGGCATTAA ACAATCAAAA CCTAGTGCTA GACATTATGG TTAAGGAGCG TACCAAAGAG
CTTGAATCAA GTCAGGAATA TTCTAATAAG CTCGAAAAAT TAGTACAAAA ACGCACCCTA
AATTTACAAA AAGCCAACAC AGCCTTGGAG CAGTCATCAA TTACCGACGC ACTCACAGGT
ATTCGAAATC GTCGTTTCCT TGATCAACAA CTTTCAAGTG ATTGGGCAAT ACAATCTCGT
AATAATTTAC CCTTATCTAT TTTAATGATA GATATTGATT ACTTTAAAAA ATACAACGAT
TATTACGGAC ACCAACAAGG TGATGAGTGT TTGCAAAAAA TAGCAAAAGA GATTCAATCA
GTCATAAATC GTCCAACAGA TAATCTATGT CGATATGGTG GAGAAGAGTT TGTCGTCATT
ACCTACAACG ATGCTGAGGG TGCAAAGCAT ATTGCTAAAC TTATTCTGAA AAAGCTTGAT
GAATTAGCCT TAGTTCACCT TACATCGGAT AAAGGCATAG TGTCTGTCAG TATAGGCCTA
GGAACTATGG TTCCATCAAT CGAAGTAGCG CCAGCTCGAC TGCTTAAGTA TGCCGATGAT
GCATTGTATC AAGCGAAGAA TAATGGCCGT GATCAGCTAT GTTAA
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| Protein sequence | MLLDVKFTKN TCTKLIGLWL KFFLFYSLLP FSTSAQEASF RFKRLGLEDG LSQISVNGIA
QDVNGFIWFA TQDGLNKYDG YQITTYRHQP SDPNSIINNH IHSIFKDSKH NLWIGSYGGL
SKYEPKTDNF THYNSPSLND SDGKVGYIQS LFEDSDGELW LSSNMGLYRY SIDTNTYILY
LPDDNKPNSV IHSEIKSIAE DSIGNIWIGT TIGVSKYNKR NNTFTNYQHS PENPHSLSNN
FVLKIYKDSQ NNLWFGTFGG GLDRYDNDTS KFVHHRTNTQ NKNSLGNNYI RTILEDSAGM
LWLGTNNGLY AFDSSKLIFQ RFRHSVNDRH SLSHDVIYSL FQDKDGSLWA GTLGGGVNLF
RPSTNVFKHY KSNPNNPESL NANMVYAIYD DDEYVWVGTS GGGLNKLNKT TGKFSNFTEP
ETSVGLGLNK VNYIIKASEA ELWLSTNSDG LLKYNKNTGN ITQYKHHPDD RNSLSNNRAR
GLAIDKEGNL WIGTAGGGLN KLDPISGQFT HFMPDTDNPN SISTNFIRCL LYDSKGRLWT
GSYGQGLNRF DFDTQTFINF NKDSVKEPIL SNKFIRSIFE DKSGNIWVLT NGGIIKYDES
KGSFHSYTTT DGLPSNVVYG ALEDQKNNLW LSTNNGLSKF NPQNITFENY TKEEGIQENE
FNTGSFFKNK TGEMYFGGIN GFTLFHPDKI KKDKTIPTVS FTNLLLYNDA IAIGESERFS
SHISSTNALN FAHNDDVITF EFSALSYSQA NNISYRYQLQ GFSDNWIETD HNHRRATFTN
LSKGDYILKV KASNRNRSWG EETTDLRITI AAAYWETTWF RGLLLAIGFI VFVIAIKWRE
KALNNQNLVL DIMVKERTKE LESSQEYSNK LEKLVQKRTL NLQKANTALE QSSITDALTG
IRNRRFLDQQ LSSDWAIQSR NNLPLSILMI DIDYFKKYND YYGHQQGDEC LQKIAKEIQS
VINRPTDNLC RYGGEEFVVI TYNDAEGAKH IAKLILKKLD ELALVHLTSD KGIVSVSIGL
GTMVPSIEVA PARLLKYADD ALYQAKNNGR DQLC
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