| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2562 |
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| Symbol | |
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| ID | 3519728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2664931 |
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| End bp | 2666100 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637285016 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_269277 |
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| Protein GI | 71278088 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.718255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTG ACCAATTTAT AAAACCGTTA GTTATCGCCA TATTGGCAAC AACATTGCTA
AGTGCTTGTG AAAAAACACC TCAAGTGGAA GCTGAGCCAG AGTTAAGACC AGTAAGAACT
TTATTGGTCA AGACTGTTGA TGTTAGCCAA GCACTTGAAT TCACGGCTGT GGTGGATGCG
GTAAACCGAG CTGATTTAGC ATTTAAAATA TCAGGTAACC TAACGCACTT TGTAGTAAAG
CAAGGCGATA AGGTTAACAA AGGTGATGTT ATCGCAAAAT TGGATGACAC AGACTTAAAA
ATCTATGTAG CAGAAGCGCA AGCGCATTTT GATACCGCTA TGGCGGATTT AATTCGAGCT
AAAAACTTAG TTAAAACAAA CTATATTTCG GCCTCGGAAT TTGACCAGAT AAGAACCAAG
GCGCAGTCAG CCAAAGCACA GTTAGCAAGT GCAAACAACA ACTTAGATTA TAGTACATTA
CGCGCTTCAT TTAATGGTGT TATAGCTAAG GTTTACAGCA AGAACTATCA AGAAATCAAT
GCCAAAGAGC CTATTGTTCG ACTTCATGAT TTAAGTGAAA TACAACTGAT TGTAAATATC
CCTGAAAGCA TCATGATTCA CTTGAAAAAG AACGCTGCAC AAGGTGTAGT TAGTGCCACC
TTTAATTCAA TTGAAGATCA CAGTTTCCCT CTACAGTTCA GTGAAGTAGC CACTCTTGCT
GATGAACACA GTAAAACGTA TGAAGTGATA TTTACCATGA AGGCACTTGA TGGTTATGTC
ATTTTACCGG GGATGACGGC ATTAGTTCGC GCACAGGTAG CGTTGGCACA AAGTGAAAAT
CATGTTTACC CAAGCTTTTA TTTACCCAGT CATACTGTAC TAAAAGACAG TCAAGGCAAT
TATGTTTATG TAGTGAATAA ACACAAAGTA GGTGTTGGGA TTATAGTAAG AAAATCTGTG
ATTATTGGCA ATATTACCTC ACAAGGTATT GAGGTGTTTA CCAACGTTGC GCCTTCGGTA
ACGTCGGGCC CAAATGCTGG CATAGTGTCA GGTGACCATG TGATCACTGC TGGAATGAGT
AAGGTGTCTG CTGGCAGCTT AGTTAAATTT ACTCAAACGA GTGATTTAGC CACAACTTCC
AGTAAGAAAA ATAGCAGAGA CATTCTATGA
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| Protein sequence | MSFDQFIKPL VIAILATTLL SACEKTPQVE AEPELRPVRT LLVKTVDVSQ ALEFTAVVDA
VNRADLAFKI SGNLTHFVVK QGDKVNKGDV IAKLDDTDLK IYVAEAQAHF DTAMADLIRA
KNLVKTNYIS ASEFDQIRTK AQSAKAQLAS ANNNLDYSTL RASFNGVIAK VYSKNYQEIN
AKEPIVRLHD LSEIQLIVNI PESIMIHLKK NAAQGVVSAT FNSIEDHSFP LQFSEVATLA
DEHSKTYEVI FTMKALDGYV ILPGMTALVR AQVALAQSEN HVYPSFYLPS HTVLKDSQGN
YVYVVNKHKV GVGIIVRKSV IIGNITSQGI EVFTNVAPSV TSGPNAGIVS GDHVITAGMS
KVSAGSLVKF TQTSDLATTS SKKNSRDIL
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