| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2480 |
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| Symbol | soxA1 |
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| ID | 3522790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2596916 |
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| End bp | 2599939 |
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| Gene Length | 3024 bp |
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| Protein Length | 1007 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637284935 |
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| Product | sarcosine oxidase, alpha subunit |
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| Protein accession | YP_269196 |
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| Protein GI | 71282317 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAG TTAATCGAAT CGCTGGAAGC AGCAAACGCA TTAATCGCAA CCGCACCTTA
ACCTTTAGCT TTAACGGCAA AGAATATACA GGTTTTGAAG GCGATACCGT CGCATCAGCC
TTGTTAGCTA ATGGTGTTGA TGTCGTTGGG CGTAGTTTTA AGTACTCACG TCCTCGCGGT
ATTATTACCA GTGACTCGCA AGAGCCGAAC GCCATTTTTC AAATTGGCTC GACGCAAGCG
ACCACTATTC CTAACCCACG CGCGACACAA ACCGACTTGT ACCAAGGATT AACCGCAAGC
TCAACCAACG GTTGGCCTAA TGTTGATTTC GATTTAATGG GCACCGTGGG CAAATTAGGT
GGCTCGATGA TGCCGCCCGG GTTTTATTAC AAAACCTTTA TGTTTCCACA ATCGTTATGG
ATGTCATACG AGCACTTAAT TCGCAAAGGC GCTGGTTTAG GGGCAAGTCC TCAGCAAAAT
GACCCGGACA GTTATGACAA AATGCACCAT CATTGTGATG TGATGATTGT CGGTGGTGGT
CCTGCGGGCT TAGCCGCAGC GTTATCTGCT GCGCAAACAG GCGCACGCGT TATCATCAGT
GATGAGCAAA ATGAATTTGG CGGCAGTTTA TTATGCTCAA CGCAGCAAAT AGATGGCCAA
TTGCCGAGTC AATGGGTAGA AAAAACCGTG GCACAGCTTA GCGAGATGGA TAACGTGATG
TTACTTCCTC GCAGCACGGT GTTTGGTTAT TACGACCATA ACCTAGTGGG CATTAATGAA
CGTCGCACCG ACCATTTAGG TGAGCATCAA CTGCAAAGCA CCCGTCAACG CGTGCATAAA
GTGCGCGCTA AACAAGTGAT TTTAGCCACC GGTGCTCATG AGCGTCCGCT TGTTTATGGT
AACAATGACG TGCCAGGTTG TATGTTAGCC AATGCAATTT CTACCTACAT TAATCGCTAT
GATGTAGTAC CAGGCAAGCA ATTGGTGTTA ATGACCACCA ATGATAATGC CTACAAAACC
GCGATTGATT GGCATCAAGC CGGTCGTAAA GTGGTCGCTA TCGTTGATAC GCGAAGCACC
TCAAATGGCG ACTTGGTCAA TAAGGTCAAA AAACTGGGCA TCGATATCAT CTTTGGCCAT
GGCGTGATTG AAGTCAAAGG CAGCAAACGC GTCAAAGGCG TTGAGGTTGC GCCAATCAAT
GCGAGTAATC ACAGTGTTAC TGGTCCAGCG AAACATATTG TCTGTGATAC GGTTGCCAGC
TCAGGTGGTT GGAGCCCTGT TATTCATTTG TCATCACACA CAGGCTCGCG TCCGGTGTGG
AACGACGACA TTGCGGGGTT TGTACCCGGT GATACCGTGC AAAAGCAACA CAGTTGCGGT
GGACTGGAAG GCGTTTACGC GTTATCAAAA GTCATCAGTG ATGGTTTCAC CACTGGCGCT
GTCGCAGCAG AGGCCGCAGG CAAAGGTGAT GGACGTTATG CGGGGAACTC GCCAACAACC
AGCGACCCAC AAGAAGATGC GTCCATGGCG CTGTTTCACA TACCGCACAG TAAAAAAACC
AGTCGCGCGC CAAAACAGTT TGTTGATTAT CAAAATGATG TCACCGCCGC AGGTATTGAA
CTGGCAAACC GTGAAGGCTT TGAATCGATT GAGCATGTCA AACGCTACAC CGCGTTAGGT
TTTGGTACGG ACCAAGGCAA GTTAGGTAAT ATCAACGGCA TGGCAATTAC CGCTAAATCG
TTAGGTAAAA CTATCCCTGA AACGGGCACC ACTATCTTCC GCCCTATGTA TACCCCCACC
ACGTTTGGCG CCTTAGCGGG TGCGGATGTG AAGCACTTGT TCGACCCAGC ACGTTTTAGC
GCTATGCATA AATGGCATTT AGAAAATGGC GCTGAGTTTG AAGATGTTGG CCAATGGAAA
CGCCCGTGGT ACTTCCCACA GCCAGGCGAA ACCATGCAGC AATCACTCGA GCGTGAATGT
TTAGCAACAC GTAACAGTGT CGGTATTTTA GATGCTTCGA CCTTAGGTAA AATTGATATT
CAAGGCAAAG ATGCACGCGA ATTTTTAAAC CGCGTCTATA CCAACCCATG GAGCAAGTTA
GGCGTAGGCA AATGTCGCTA CGGCGTTATG TGTAAAGAAG ACGGTATGGT CTTTGATGAT
GGGGTTACCG TCTGTCTTGA CGATAATCGT TTTATCATGA CCACCACCAC TGGCGGGGCG
GCGGGCGTAT TGCAATGGTT AGAGCTATGG CATCAAACCG AGTGGCCTGA GCTGGAGGTG
TATTTCTCAA CCGTGACTGA CCATTGGTCA ACCATGACTA TCTCAGGACC TAACTCTCGT
AAAGTCTTGG AGAAAATCTG TGATATTGAT GTCAGTAATG ACAGTTTCAA GTACATGGAT
TGGCGCGCAG CGACGGTTGC GGGGGTTAAA GCACGCATTT TCCGTATCTC GTTTACCGGC
GAGCTGTCGT TTGAAATTAA CGTGCAAGCA AACTATGGCA TGCATGCCTG GAAAGCGGTG
ATGGCGGCGG GTGAAGAATT TAATATCACC CCGTATGGCA CCGAAACCAT GCATATTTTA
CGTGCAGAAA AAGGCTTTAT CATTGTCGGA CAAGACACCG ATGGCTCGGT GACACCACAA
GATTTAGACA TGGACTGGGT TGTGGGTAAG AAAAAAGACT TTAGCTTTAT TGGTAAACGC
TCTTGGACGC GCTTTGACAA TAAACGTGAC GATCGTAAAC AAATGGTGGG CTTGAAACCG
AAAGACCCTA CTTTTGTACT GCCTGAAGGC GCACAAATTG TCTTTGAGAA AAACCAATCC
ATCCCAATGA AAATGGTGGG TCACGTTACC TCAAGTTATT ACAGTGCTTG TATGGGCTAC
TCGTTTGCCT TAGCAGTCGT TAAAGGCGGT ATTAGCCGCA AAGGTGAGAG TGTCTATTTG
CCATTAAGTG ATGGCACCAC CGTGGAAGCT GAAATTTGCA GCCCAGTATT TTATGATCCA
AAGGGAGACC GTCAAAATGT CTAA
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| Protein sequence | MSQVNRIAGS SKRINRNRTL TFSFNGKEYT GFEGDTVASA LLANGVDVVG RSFKYSRPRG
IITSDSQEPN AIFQIGSTQA TTIPNPRATQ TDLYQGLTAS STNGWPNVDF DLMGTVGKLG
GSMMPPGFYY KTFMFPQSLW MSYEHLIRKG AGLGASPQQN DPDSYDKMHH HCDVMIVGGG
PAGLAAALSA AQTGARVIIS DEQNEFGGSL LCSTQQIDGQ LPSQWVEKTV AQLSEMDNVM
LLPRSTVFGY YDHNLVGINE RRTDHLGEHQ LQSTRQRVHK VRAKQVILAT GAHERPLVYG
NNDVPGCMLA NAISTYINRY DVVPGKQLVL MTTNDNAYKT AIDWHQAGRK VVAIVDTRST
SNGDLVNKVK KLGIDIIFGH GVIEVKGSKR VKGVEVAPIN ASNHSVTGPA KHIVCDTVAS
SGGWSPVIHL SSHTGSRPVW NDDIAGFVPG DTVQKQHSCG GLEGVYALSK VISDGFTTGA
VAAEAAGKGD GRYAGNSPTT SDPQEDASMA LFHIPHSKKT SRAPKQFVDY QNDVTAAGIE
LANREGFESI EHVKRYTALG FGTDQGKLGN INGMAITAKS LGKTIPETGT TIFRPMYTPT
TFGALAGADV KHLFDPARFS AMHKWHLENG AEFEDVGQWK RPWYFPQPGE TMQQSLEREC
LATRNSVGIL DASTLGKIDI QGKDAREFLN RVYTNPWSKL GVGKCRYGVM CKEDGMVFDD
GVTVCLDDNR FIMTTTTGGA AGVLQWLELW HQTEWPELEV YFSTVTDHWS TMTISGPNSR
KVLEKICDID VSNDSFKYMD WRAATVAGVK ARIFRISFTG ELSFEINVQA NYGMHAWKAV
MAAGEEFNIT PYGTETMHIL RAEKGFIIVG QDTDGSVTPQ DLDMDWVVGK KKDFSFIGKR
SWTRFDNKRD DRKQMVGLKP KDPTFVLPEG AQIVFEKNQS IPMKMVGHVT SSYYSACMGY
SFALAVVKGG ISRKGESVYL PLSDGTTVEA EICSPVFYDP KGDRQNV
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