Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2478 |
Symbol | soxB1 |
ID | 3521798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 2595357 |
End bp | 2596607 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637284933 |
Product | sarcosine oxidase, beta subunit |
Protein accession | YP_269194 |
Protein GI | 71281326 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAAT ATTCAGGATT TGGTTTATTA AAACACTCGT TAACTTACCA CGAGAATTGG CAACGGGTTT GGAGTAATCC TACCCCGAAA AAACACTATG ATGTTGTTAT CATAGGCGGT GGTGGACATG GTCTGGCAAC GGCTTATTAT TTAGCGAAAG AGCATGGCAT CACTAACATT GCCGTGATTG AAAAAGGTTA TTTAGGCGGC GGTAATACCG CGCGTAATAC CACCATTGTG CGTTCAAACT ATTTATGGGA CGAAGCGTCT CACTTATATG AGCATTCCTT AAAATTATGG GAAGGCTTAG CACAAGAGCT GAACTATAAC TTGATGTTTA GTCAACGCGG TGTATTAAAC CTAGGCCATA CCCTACAAGA CATGCGTGAT ATTGAACGCC GCGTGAATGC TAACCGTCTT AACGGCATTG ATGGTGAAGT CTTAACCACC GCACAAGTAC AAGAAATGGT GCCTATTTTA GATTGCTCAA CCAATGCACG TTTTCCGGTG ATGGGCGCTT CATGGCAAGC CCGTGCAGGT ACGGCTCGTC ACGACGCGGT TGCCTGGGGT TTTGCTCGCG CAGCCGATGC GTTAGGGGTT GATTTATTAC AGCAAACGGA AGTCACTGGC ATTCGCCGTA AAGATGGCGC AGTAGAGGGC GTTGAAACCA ATCGCGGCTT TATTTCGGCC GGTAAAGTGG CATGTGTCGC TGCGGGTAAC TCCAGTGTTA TCGCCAAGAT GGTGGGCATG GAATTACCGC TTGAATCTCA TCCACTGCAA GCGATGGTAT CAGAGCCATT AAAACCAATT TTAAATACCG TGGTGATGTC CAATCATGTC CACGGGTATG TCAGTCAATC CGATAAAGGT GACTTGGTCA TCGGCGCGGG TATTGATGGT TATACCGGTT ATGGTCAGCG CGGCTCTTTT AATGTGGTTG AGCATACTAT TGCCGCCATT ATCGAAATGT TTCCTATTTT CAGTCGTGTG CGTCTTAATC GCGCCTGGGG CGGCGTGGTT GATACGTGCC CAGATGCCTG TCCTATCATT TCGAAAACAC ACATCAAAGG ACTGTATTTT AACTGTGGTT GGGGCACGGG TGGTTTTAAG GCTACGCCGG GCGCTGGGCA TGTCTTTGCG CATACTATCG CCAACGATGA GCCACACCCG TTAGCCAAAC CCTTTAGTAT CGACCGCTTT TCATCAGGCG AATTAATTGA CGAACACGGC GCTGCCGGTG TTGCGCACTA A
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Protein sequence | MQQYSGFGLL KHSLTYHENW QRVWSNPTPK KHYDVVIIGG GGHGLATAYY LAKEHGITNI AVIEKGYLGG GNTARNTTIV RSNYLWDEAS HLYEHSLKLW EGLAQELNYN LMFSQRGVLN LGHTLQDMRD IERRVNANRL NGIDGEVLTT AQVQEMVPIL DCSTNARFPV MGASWQARAG TARHDAVAWG FARAADALGV DLLQQTEVTG IRRKDGAVEG VETNRGFISA GKVACVAAGN SSVIAKMVGM ELPLESHPLQ AMVSEPLKPI LNTVVMSNHV HGYVSQSDKG DLVIGAGIDG YTGYGQRGSF NVVEHTIAAI IEMFPIFSRV RLNRAWGGVV DTCPDACPII SKTHIKGLYF NCGWGTGGFK ATPGAGHVFA HTIANDEPHP LAKPFSIDRF SSGELIDEHG AAGVAH
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