| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2477 |
|---|
| Symbol | glyA |
|---|
| ID | 3520009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2594017 |
|---|
| End bp | 2595270 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637284932 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_269193 |
|---|
| Protein GI | 71279550 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTACA AAAATGATCA AATAGCCGGT TTCGATGACA GTATTTGGCA AGCCATGGAG
CAAGAAGACA AACGTCAACA AGATCACGTT GAATTAATTG CCTCAGAAAA CTATACCAGT
GCGCGCGTGA TGCAAGCCCA AGGCAGTCAA CTGACCAACA AATACGCCGA AGGTTATCCT
GGTAAACGTT ATTACGGCGG CTGTGAACAC GTTGATGTGA TTGAGCAACT GGCGATTGAT
CGTGCAAAAG AATTGTTCGG CGCTGATTAC GCCAATGTAC AACCCCATTC TGGCTCACAA
GCCAATGCCG CAGTATTTAT GGCCTTGCTT AAGCCCGGTG AAACGGTGCT CGGCATGAGC
TTAGCGCACG GTGGTCATTT AACCCACGGC TCTAAAGTAA GCTTCTCTGG TAAAATTTAT
AACGCAGTGC AATACGGCTT AAATGAAGCA ACCGGTGAAA TTGACTACGA AGAAGTCGAG
CGTCTTGCAA AAGAGCATCA ACCGAAAATG ATTATTGCCG GTTTCTCAGC GTATTCACGT
GTGGTTGATT GGCAGCGTTT TCGTGACATT GCCGATAGCA TTGGCGCGTG GTTATTTGTC
GATATGGCGC ACGTAGCTGG TTTAGTGGCG GCAGGTCTTT ATCCTAACCC GGTACCGATT
GCGGATGTGG TGACTACCAC TACCCATAAA ACCTTACGTG GTCCTCGTGG CGGTTTGATT
TTAGCGAAAC AAAATGACGA ACTGGCTAAG AAATTAAATT CAGCGGTATT CCCTGCCGGT
CAAGGTGGCC CGTTGATGCA TGTTATCGCG GCCAAAGCGA TTTGTTTCAA AGAAGCACTT
GGCGAGGGTT ATGTTGAGTA TCAGCAACAG GTTATCGATA ACGCCCGTGA AATGGCAAAA
ACATTCCAAA CCCGTGGTTA TAACGTAGTT TCTGGCGGTA CGGACAATCA TTTATTTTTA
TTGGATTTAA TCGATAAAGG TATTACCGGT AAAGACGCCG ATGCTGCGCT TGGCCGCGCT
AATATCACGG TCAATAAAAA CTCCGTGCCT AACGACCCAC AATCACCATT TGTCACCAGT
GGTCTGCGTA TCGGCACACC AGCCATCACC AGTCGTGGTT TTGGACTTGA GGAAGCAGCA
GCATTAACGG GTTGGATTTG TGATGTGTTA GATGACATTA GCAATGAGCA AGTGATTGAT
GACGTGCGAA GTAAAGTGTT GGACTTATGT GAAAAAAATC CGGTCTACCG CTAG
|
|---|
| Protein sequence | MFYKNDQIAG FDDSIWQAME QEDKRQQDHV ELIASENYTS ARVMQAQGSQ LTNKYAEGYP
GKRYYGGCEH VDVIEQLAID RAKELFGADY ANVQPHSGSQ ANAAVFMALL KPGETVLGMS
LAHGGHLTHG SKVSFSGKIY NAVQYGLNEA TGEIDYEEVE RLAKEHQPKM IIAGFSAYSR
VVDWQRFRDI ADSIGAWLFV DMAHVAGLVA AGLYPNPVPI ADVVTTTTHK TLRGPRGGLI
LAKQNDELAK KLNSAVFPAG QGGPLMHVIA AKAICFKEAL GEGYVEYQQQ VIDNAREMAK
TFQTRGYNVV SGGTDNHLFL LDLIDKGITG KDADAALGRA NITVNKNSVP NDPQSPFVTS
GLRIGTPAIT SRGFGLEEAA ALTGWICDVL DDISNEQVID DVRSKVLDLC EKNPVYR
|
|---|
| |