Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2429 |
Symbol | |
ID | 3522932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 2542247 |
End bp | 2543572 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637284884 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_269145 |
Protein GI | 71282458 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.281145 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAACC GCCAACTTGC TAACCGTCAA TGGCCCGAAC ATGAGTTTTC TGATGCTATT GAAGCCCCGA TAGAACGAAA AGTGATCAGA AATATAACCT ATATGATTTT AGGCTCAATA TTTTGTTTAT TACTGTGGTC TATTTTTTCA AAAGTTGAGG AAATAGCGAA AGCACAAGGA CAGGTTGTTC CTCTTGGACA TCGACAAGTT ATTCAAAGTC AGTTAGGCGG TACTATTAAT GCGATTGTTG TCGAAGAAGG GGACGTGGTC AAAAAAGGCG ATGTTTTAGT CAATTTTATT GCTATTAATA GTCAATCTGC AAAAGAAGAG CTGGCAAGTA AATATGCTAA TTTGATGATG AAAAAAGAAA GATTATCGGC TTTTAAAGAA AGACGAGAGG CCGATTTTAA TGATTATAAC GAAGTATATC CAAGGTTAGC ACTTCAACAA CGTCAAGCAT TAGGTAGTAT GAATAGTGAG CTTGTTGCTA TTGAGTCATT ATCAAAATCT GACGTGGCTA AATCTCAAGC AGAATATCAT GCGATAGAAA AAGAAATTCC GGCATTAAAA GATCAAATTA TTGCCTCTGA AAAAACATTA GCAATGATGA CAACCCTTGC TAAAACGGGT GGTATCTCGC AGTTAAAGCT TTTAGAAACC CAACAAAAAC TTGATTCATA CCAACGTGAA TTGAGTGTTT TAGAAGGGAA AGAGCAAGTG CTGTCTAAAA ATATGTCTAA TTTAAATGAG CAACTTAATA ATAAGAAAGC GTCTCTCTTA AAACTTGTAG GTGAAACATT AACAGAAACA CAAGGTGAAA TTCTTGCCGT TGAAGCAAGA CAAAGATCAT CAGATTCAGA TGTTTCACAA AGCACTGTTG TTGCGCCTGT TAATGGCATT ATTCAGTCAA TACCCAGTAG TAGCGTTGGC AGTGTTATTC CTCCTGGGGG GACAGTAGCA GTTATTGTCC CCGTTACAGA GAAAGCATTG CTGGAAGCTA AATTATCCCC AAGAGATATT GGTTTTGTTT CTATCGGTCA AAAGGCCAGA ATTAAAATCG ATGCCTTTGA TTACAGTCGA TATGGCGCTT TAGACGGTAT AGTTAAAAAA ATATCACCAA GTACAGATGC AGATGAAAGA GGTGGTGTTT TTTATAAGGT GCAAATTGCC ATTGATAAAC CCTATTTTGG CAAAAATCCT GGTGACTTAG AGTTAATTCC AGGCATGACA GGTGAGGCTG ATATTGTTAC GGGTGATAAA ACAATATTTC AATATTTATG GAAACCAGTA TTTACTAACG TAACTAGTGC TTTTGGTGAA AGATAA
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Protein sequence | MNNRQLANRQ WPEHEFSDAI EAPIERKVIR NITYMILGSI FCLLLWSIFS KVEEIAKAQG QVVPLGHRQV IQSQLGGTIN AIVVEEGDVV KKGDVLVNFI AINSQSAKEE LASKYANLMM KKERLSAFKE RREADFNDYN EVYPRLALQQ RQALGSMNSE LVAIESLSKS DVAKSQAEYH AIEKEIPALK DQIIASEKTL AMMTTLAKTG GISQLKLLET QQKLDSYQRE LSVLEGKEQV LSKNMSNLNE QLNNKKASLL KLVGETLTET QGEILAVEAR QRSSDSDVSQ STVVAPVNGI IQSIPSSSVG SVIPPGGTVA VIVPVTEKAL LEAKLSPRDI GFVSIGQKAR IKIDAFDYSR YGALDGIVKK ISPSTDADER GGVFYKVQIA IDKPYFGKNP GDLELIPGMT GEADIVTGDK TIFQYLWKPV FTNVTSAFGE R
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