| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2394 |
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| Symbol | |
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| ID | 3521435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2509638 |
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| End bp | 2510885 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637284850 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_269111 |
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| Protein GI | 71280966 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.272098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGATTTC TATCGAGGTT AATAAATACC AGTCGATTAT CAAGAGTATT ATTGATTCGA
ATATTGTTAT TTAGTGGATT ATTTACCGTA ATAATTACCG CTATCCAGTT GTCATTAAAT
CATCAAAAAT ATACAGATGA ATTACAACAA AAATCTCAAG AATTGATTGA ATTAAGTACA
CCTTCTTTGA CTCTAGCTCT CTGGGATTTA ATGGAAAATA GCGCTCTTGT TTTTAGTGAA
GGGATGATGC GGTCAGGATA TTATAAATCT ATATTGATCA AGAATGAGAC AAAGAAGGAT
ATCGCCTTTT TAGGTCAAAT AGACAAAAAT GCTGATAAAC AGACGTTCAA CTTAATAGCT
GAAGTAGAGA AAAGGCCTGT AATAATAGGC ACTATTGAGT ATCAAATTGA TACTGATCAA
GTAAAACAAA AAACCATTGA TGAGTTCATT ATCATTCTTA TCTCTCAGTT TATTAAGACC
TTTTTTGTTT CCATTTTTAT CCTTTTCATC ATCCATAAAT TGGTAATTCG TCATTTGAAT
GACATATCTA ACTGGCTAGA GAGTTTTAAG CCAGAATCAT CATTCAGTCC GCTTACTTTG
GTGGCTGACA AAGATAGTAG TAACGAGATG GTTAAGCTTA AATCAGCTAT TAGTGAGATG
GGGCAACAGG TGCATAAGCA CACCACAGGA TTAGAAAAGA TTGTAACTGA GCGTACAGCT
GAATTAGAAA AACTTGCTTA TACTGACAGC CTAACAGGTG TTGCTAATAG ATGTGCTTTC
CTCCAAGTAT CAAATGAAGA ACTAAGTCGA TCACGGCGGT TATCTTATGA TGTCTGTGTG
ATGATGTTAG ATTTAGACCA TTTTAAAGTA ATCAACGATA CCTATGGTCA CGATGCTGGA
GATAAAGTGC TTAAACAAGT ATCCGAAGCA ATGAATAATT GCTTGCGAAA AGAAGACACA
TTAGGGCGAA TAGGTGGTGA AGAGTTTGCC ATCATTGCGC CTGGTGTTGA TAAGGGAGGA
ATGCACAAGC TAGCTTCACG ATTACAACAA TCTATCGCAT TACTTGATTT TTCATTTCTA
CCTGAAAATA AAAATATTAC CGTAAGTATT GGTTATACCA AAGTCAGTAA TGATGAAGAC
TTTAAAGAAG CTTTAAAAAG AGCTGATAAG TATTTATATT CCGCAAAAAA TTCTGGCCGC
AATACCTTCA TAACAGATAA GGGGTTTGTA CCTAGCATTG TGAGTTAA
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| Protein sequence | MRFLSRLINT SRLSRVLLIR ILLFSGLFTV IITAIQLSLN HQKYTDELQQ KSQELIELST
PSLTLALWDL MENSALVFSE GMMRSGYYKS ILIKNETKKD IAFLGQIDKN ADKQTFNLIA
EVEKRPVIIG TIEYQIDTDQ VKQKTIDEFI IILISQFIKT FFVSIFILFI IHKLVIRHLN
DISNWLESFK PESSFSPLTL VADKDSSNEM VKLKSAISEM GQQVHKHTTG LEKIVTERTA
ELEKLAYTDS LTGVANRCAF LQVSNEELSR SRRLSYDVCV MMLDLDHFKV INDTYGHDAG
DKVLKQVSEA MNNCLRKEDT LGRIGGEEFA IIAPGVDKGG MHKLASRLQQ SIALLDFSFL
PENKNITVSI GYTKVSNDED FKEALKRADK YLYSAKNSGR NTFITDKGFV PSIVS
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