| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2389 |
|---|
| Symbol | |
|---|
| ID | 3521455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2503483 |
|---|
| End bp | 2504793 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637284846 |
|---|
| Product | glucose/galactose transporter family protein |
|---|
| Protein accession | YP_269107 |
|---|
| Protein GI | 71280986 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.706169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTA GTGGTTCGGC AGACTTGTCA CAGTTTAAAG CGCAAAGTGA CTCAGGACAG
AGTTATAATT TCACATTAGT CGTGTTGACA TCGTTATTTT TCATGTGGGG GTTTATTGCC
TGTTTGAATG ATATATTGAT CCCACATTTA AAAAATGTCT TCTCATTGAA CTATACCCAA
GCAATGTTAA TTCAGTTTTG CTTTTTTAGC GCATATTTTA TTGTTTCAAT GCCAGCCGCT
GCCTTGATCA AGAAGGTGGG TTACAAATTT GGTATTGTTT CAGGATTATC TATTGCAGGA
ATTGGCTGCG TATTATTTTA TCCAGCGGCA GGAGCTCAGT CATACCCTTT GTTTTTGTTT
GCTTTGTTTG TACTTGCTTC GGGTATTACT TGCCTGCAAG TGTCAGCAAA CCCTTATGTT
GCTAGCCTTG GTCGTGCCGA AACTGCATCG AGTCGTTTAA ATTTAACTCA AGCTTTTAAT
TCGTTAGGTA CAACGGTAGC GCCATTTTTT GGTGGGTTAT TTATATTATC TGCTGTTTCT
TTAGGTGCGG AACAAATTGC ACAACTTTCT GTAGCAGAGC AAGCCGCTGC AAAATTACAA
GAAGCACAAG CAGTACAAAT ACCCTATTTA GTCTTAGCTG GTATTTTATT TGGTCTTGCG
GCTATCTTTA CTTTCTTAAA ATTACCAAAA ATAGAATCTA TTGAAACGGA TGATAGCTGT
GCTGATGCGG TTAGCTTGAA GGAACAGCCT TCTGCGTGGA AAACACCACA CCTTATGTTG
GGCGCTTTAG GGATATTTGT TTATGTAGGA GCCGAAGTTT CTATTGGTAG CTTTTTGATC
TCATTTTTAG GTGAAGATAA TATTGCGGGT TTAGCTGAAG CACAAGCAGC TAATTATATT
GCTTATTATT GGGGAGGGGC TATGGTAGGG CGCTTTATTG GTGCAGCCTT AATGCGTTTT
GTTGCTGCTA ATAAAATTCT AACTGTCAAT GCTATTAGTG CAGTAATTCT TCTTATTGTG
GCAATAACAT CATCAGGTCA AGTCGCTATG TGGGCAATTT TATCGGTGGG TTTATGTAAC
TCTATTATGT TTCCTACTAT TTTTACCCTA GCGGTAAATA GGTTAGGTAA AGCTACAGGG
CAAGGCTCTG GTATTTTATG TTTATCTATT GCTGGTGGCG CTTTAATTCC ACTACTTCAA
GGTGTATTAG CTGATGCTAT TGGTATTCAA ATGGCATTTG TTCTTCCTGT TATGTGTTAC
TTATACATCA TGTTTTATGG TGTAAAGGGA TCTCGGATTG GTTTGCAATA A
|
|---|
| Protein sequence | MAVSGSADLS QFKAQSDSGQ SYNFTLVVLT SLFFMWGFIA CLNDILIPHL KNVFSLNYTQ
AMLIQFCFFS AYFIVSMPAA ALIKKVGYKF GIVSGLSIAG IGCVLFYPAA GAQSYPLFLF
ALFVLASGIT CLQVSANPYV ASLGRAETAS SRLNLTQAFN SLGTTVAPFF GGLFILSAVS
LGAEQIAQLS VAEQAAAKLQ EAQAVQIPYL VLAGILFGLA AIFTFLKLPK IESIETDDSC
ADAVSLKEQP SAWKTPHLML GALGIFVYVG AEVSIGSFLI SFLGEDNIAG LAEAQAANYI
AYYWGGAMVG RFIGAALMRF VAANKILTVN AISAVILLIV AITSSGQVAM WAILSVGLCN
SIMFPTIFTL AVNRLGKATG QGSGILCLSI AGGALIPLLQ GVLADAIGIQ MAFVLPVMCY
LYIMFYGVKG SRIGLQ
|
|---|
| |