| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2385 |
|---|
| Symbol | |
|---|
| ID | 3520217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2498187 |
|---|
| End bp | 2499518 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637284842 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_269103 |
|---|
| Protein GI | 71279756 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.471992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAT TTAGCAGCAC AAATAACAAA AACACCTCAA GTCAACTAAA CCTACTAAAG
CAACGCTCCT TAATGAAAAG TACCTTACCG ATTATTATTT TAATTATTGC TGTGCTTGGC
AGCTATTTTA TTTATCATTC AGGAAAATCA AATTTATTAT TAAGTACTAA GGTTAGTGAG
AAAAAAAATC TAAATGATGT AACAAAATCA AAAAATCAAA AAAAAATACG CATTGTAAAT
ACTCAATTAA TAACAGTCGA AACACATACC CCAACATGGC AAGCAACAGG CGTGGTAAAA
CCGGCTCAAA CATTAAATCT TAAAGCTGAA GTCTCAGGAG TTATCAATAA AGTAAACCCT
GATGCTATTC CAGGGGCATT AATTCACCAG GGAGAAACAC TTTTAACACT CAATAGTGAA
AACTTCCAAT ATGCACTTAT TAATAAAAAA TCGGCCTTAA TACAAGCGCA ATCAACACTT
AGCATTGAAA AGGGAAACCA AGTTCTTGCC CTAGAAGCGT TTGCCTTTAT GCCTGACGAC
ATGCAAACGG AACAGGAAAA ATCTCTCGTA TTAAGAGAAC CCCAAATTGC TAGTGCCATA
GCAAAAGTGA TGAGTAATCA AGCAAGTGTT GATAAAGCAA AAGCTGATTT AGCAAAAACA
GAAATAACCA TGCCTTTCAC CGGAAAAATT CAGAAACGAA ATATAAGCTT AGGCGCAAGC
ATCAACGCCA ACAGCTCACT TTATCAGATT TTAAATATTG AACAGTTTTG GCTAGAAGTA
AAAATACCAC GTCAATTTTT CACTATTTTA GACAAGAAAC AACCCGTTTT GTTAACGCAT
CAACAAAACA GAAATATAAA ACATACTCGC TTAGGTAACA TTCTGACTAG CTTAACGTCA
CTAGATAGTC GTGATAGACA AGTACAACTG CTGGTTAGTA TTGATGACCC TTTATTGCTA
AAAAAAAGGG CACTTATAAA GGCGACACTT GGGACTGAAA CACAAGCAAC ATCAAACAAT
TCACCTAACC TTATTTTCAT CAATGATTTT TTGTTTTTAT CGCTTCATGG CAAACCATTA
GAAAACACAG TACAAATCAA ACCTCATTGG TTAATAGCTA ATGACTACAT TTGGGTGGTT
GATCAAAAAA ACACCTTGCA ACAACGTAAA GTTGAGGTGG TATTTCAGGG TAAAAAGTAC
TTATTTGTCA GAGGGAATTT CTTCGAAGGT GATCATGCAC TTATCGATAA GCTGTCGATC
GCGGTCAGTG GTATGAAGGT GAAAAAGCGT TCTTTAAAGA GTTTATCTCT AAAGGATAAA
GACAATGTTT AA
|
|---|
| Protein sequence | MTKFSSTNNK NTSSQLNLLK QRSLMKSTLP IIILIIAVLG SYFIYHSGKS NLLLSTKVSE
KKNLNDVTKS KNQKKIRIVN TQLITVETHT PTWQATGVVK PAQTLNLKAE VSGVINKVNP
DAIPGALIHQ GETLLTLNSE NFQYALINKK SALIQAQSTL SIEKGNQVLA LEAFAFMPDD
MQTEQEKSLV LREPQIASAI AKVMSNQASV DKAKADLAKT EITMPFTGKI QKRNISLGAS
INANSSLYQI LNIEQFWLEV KIPRQFFTIL DKKQPVLLTH QQNRNIKHTR LGNILTSLTS
LDSRDRQVQL LVSIDDPLLL KKRALIKATL GTETQATSNN SPNLIFINDF LFLSLHGKPL
ENTVQIKPHW LIANDYIWVV DQKNTLQQRK VEVVFQGKKY LFVRGNFFEG DHALIDKLSI
AVSGMKVKKR SLKSLSLKDK DNV
|
|---|
| |