| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2379 |
|---|
| Symbol | |
|---|
| ID | 3521354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2484274 |
|---|
| End bp | 2486886 |
|---|
| Gene Length | 2613 bp |
|---|
| Protein Length | 870 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637284836 |
|---|
| Product | glycosy hydrolase family protein |
|---|
| Protein accession | YP_269097 |
|---|
| Protein GI | 71280885 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTATT CTAAACTTAA AAGTATTCCT ATTTACTTTT CTTTACTTGC AATATCAGTA
AGCAATGTAG GCTGTGTTCA ACAAGATGTT GAAGCCAACT TAACCTCTAA AACATTGAGT
GAAAATCTGG ACTCAAAAGC CCTTCGTCAC AAAAATAAAG AGCAAGATAT TGAGAGTTTA
TTAGCTCAAC TGACCTTAGA AGAAAAAATA TCACTCGTAC ATGCTAATAC TAAGTTCGCT
AATGCTGCGG TTGAACGTCT AGGTATTCAT AGTATGGAAA TGAGTGATGG GCCTCATGGA
GTTCGCCGAC AGATATCTCG CGACAGTTGG AAACCAGCAG GCTGGGACGA TGACCAAGCG
ACTTACCTCC CTCCCCTGAC TGCAGTTGCT GCTAGTTGGG ATCCGCAAAT GGCTACACTG
CATGGTAATG TTTTAGGTAG TGAAGCTCGT CATCGAAATA AAGATGTTAT TTTAGGGCCT
GGCGTTAACC TTGCTCGTCT GCCTTTATAT GGTAGAAATT TTGAGTACTT AGGTGAAGAC
CCTTTTCTTG CCGCTAAATT AGTGGTGCCT GAAATTATTG CAATACAAGC GAATGATGTC
GCTGCAACAG TAAAACATTT TGCACTTAAT ACCCAAGAGC TAAATCGTCA TGGTGTTGAT
GCAACGCCCG ATGAACGTAC CTTACGTGAA GTTTACCTGC CAGCATTTGA AGCAGCAGTA
AAAGAGGGTA ATACCTACGC TATGATGGGG TCATACAATA ATGTTTATGG TACTAATGCC
AATCAAAATA AACATTTAAT TATGGATATA CTAAAAGGTG AATGGGGCTA CCAAGGTTTG
TTAATGACTG ACTGGGATGT TGATATTAAT ACCTATGACG CTGCCATGAA TGGCCTTGAT
CTAGAGATGG GCACCCGCGC TAAGAGTTAC GATGATTATT TTTTAGCTAA GCCTTTATTA
AAGATGATCC AATCAGGCAA AGTGCCCGTA GCTGTACTTG ACGATAAAGT GCGCCGTATA
TTACGTGTAC AATTAAGCAT TGGCATGATG GACAAACAAC GTTTTTCTGG CCAACGTAAT
ACCCAAGAGC ACAGAGATTT TTCTCGACAA ATAGCAACAC AGGGTGTGGT GTTACTTAAA
AATGAAAGTG TTGCTAGTGC TAATCACACA AACACGGTAT TACCTTTAGA TAAAAATAAA
GTAAAAAATA TCTTAGTATT AGGTCCTAAT GCCGATAAAA AACATGGCAG TGGTGGCGGT
TCATCGCAAG TAAAATCCCT TTGGGAAATA ACACCTCTAC AAGGTCTTAA AGATAAGCTT
GGTGATAATG TTGAAATACA GTTTATGCGC GCCCGCAGTC AAAGTGGTGT GCAACCTATT
GCTGAAGATT TTGTTAAAAC CAATAATCGT GGCACGGGCA CACCCGCTTG GCGATTAATT
GAATATAAAA CCAAAGATCG CAATAAAAAA GCTGCACATT ATGGCTGGTT ACCTGAATCT
AGTTATAACT CGCCGCTAGG TGATGTTATT CAACATATAA ATTTAAAAGC TGACATTATG
CCGCTAGCCA GCGGTGAACA TGTGTTGAAG CTAGGTGGTA AAGGCAATGT TAACTTAGTG
ATTAATGGTA AAGAAGTGAT CAATACTACC TTAAGCGGTG ACAAGACTTA CCAACACAAG
TTAACGTTAA AACAAGGCAA AAAATATGTT TTTACTCTTG GATATGATGG TGCTGATAAC
GTTGTGTTAG GCTGGAATGC TCCAGGTAGT CCATTTAGCA CTAAAGATGA ATATTTAGCA
GCAGCAAAAA ATGCCGATGC TGTAATCTAT TATGCAGGCT TAAGCCATGC TGATGATCGT
GAATCGAAAG ATAGGTCAAA TATGGTATTA CCGAATAACC AAGATGATAT TATCAGTGAT
TTAATTGCGG TAAACTCAAC AACAGTGGTC TTTGTTATCG GTGGCTCAGC GGTTGAAATG
CCATGGGCAG AACAAGCCAA TGCTATTGTT TGGGGCTGGT ATGGCGGCAT GGAAGCTGGA
CATAGTTATG CTGACATATT GTTTGGCGAT GTTAATCCAT CAGGAAAAAT GCCAATAACA
TTGCCAAAAA AATTAACCGA TACAGCACCA ATCGTACTTA ATGATTACAA TGAAAAAACC
TCTACATATC CTGAAGGTGT CTTTATTGGT TACCGTTGGT TTGAACAGCA AAACATTGAA
CCATTGTTTC CTTTTGGCCA TGGCCTAAGT TATACCCATT TTTCTTTTGG TGACATCTCC
CTTAACAAAG ATGTCATTTC TGCGGGTGAA ACCATTACAG CAAGCGTAAA AATAACCAAT
ACCGGTAAAG TGGCTGGAGC AGAAGTTGTT CAATTATACC TACATGATGA AGAATCGAGT
GTTCCTCGCC CAGTAAAAGA ACTAAAAGGC TTTGAAAAAG TATTCTTACA ACCCGGTGAA
AGTCAAACAG TTATGCTTAC TTTAACCCAA CGCGATTTAT CTTTTTGGGA TGTAAACACT
AAAAACTGGC TAGCAGAGCA AGGTCAATTC TCTGTACATA TCGGCAGCTC GGTAAATGAT
ATTAAAACGA GTACTAGTTT TTCTTATCAA TAG
|
|---|
| Protein sequence | MNYSKLKSIP IYFSLLAISV SNVGCVQQDV EANLTSKTLS ENLDSKALRH KNKEQDIESL
LAQLTLEEKI SLVHANTKFA NAAVERLGIH SMEMSDGPHG VRRQISRDSW KPAGWDDDQA
TYLPPLTAVA ASWDPQMATL HGNVLGSEAR HRNKDVILGP GVNLARLPLY GRNFEYLGED
PFLAAKLVVP EIIAIQANDV AATVKHFALN TQELNRHGVD ATPDERTLRE VYLPAFEAAV
KEGNTYAMMG SYNNVYGTNA NQNKHLIMDI LKGEWGYQGL LMTDWDVDIN TYDAAMNGLD
LEMGTRAKSY DDYFLAKPLL KMIQSGKVPV AVLDDKVRRI LRVQLSIGMM DKQRFSGQRN
TQEHRDFSRQ IATQGVVLLK NESVASANHT NTVLPLDKNK VKNILVLGPN ADKKHGSGGG
SSQVKSLWEI TPLQGLKDKL GDNVEIQFMR ARSQSGVQPI AEDFVKTNNR GTGTPAWRLI
EYKTKDRNKK AAHYGWLPES SYNSPLGDVI QHINLKADIM PLASGEHVLK LGGKGNVNLV
INGKEVINTT LSGDKTYQHK LTLKQGKKYV FTLGYDGADN VVLGWNAPGS PFSTKDEYLA
AAKNADAVIY YAGLSHADDR ESKDRSNMVL PNNQDDIISD LIAVNSTTVV FVIGGSAVEM
PWAEQANAIV WGWYGGMEAG HSYADILFGD VNPSGKMPIT LPKKLTDTAP IVLNDYNEKT
STYPEGVFIG YRWFEQQNIE PLFPFGHGLS YTHFSFGDIS LNKDVISAGE TITASVKITN
TGKVAGAEVV QLYLHDEESS VPRPVKELKG FEKVFLQPGE SQTVMLTLTQ RDLSFWDVNT
KNWLAEQGQF SVHIGSSVND IKTSTSFSYQ
|
|---|
| |