| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2289 |
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| Symbol | rne |
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| ID | 3522581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2387073 |
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| End bp | 2390087 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637284746 |
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| Product | ribonuclease E |
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| Protein accession | YP_269009 |
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| Protein GI | 71282108 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.705464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA TGTTAATTAA CGCTACCCAA TCAGAAGAAT TGCGCGTAGC ACTAGTAGAT
GGCCAAAAAC TTTACGATTT AGATATTGAA AGTCCAGGTC ACGAACAAAA AAAATCTAAT
ATCTATAAAG CTAAAATCAC ACGTATTGAG CCTTCTCTAG AAGCTGCTTT TGTTGATTAT
GGTGCCGATC GCCATGGTTT CTTACCAATG AAAGAAATCG CACGTGAATA CTTCCCTAAA
GGCTATACAT TTCAAGGCCG CCCTAACATT AAAGAAGTAT TACACGAAGG CCAAGAAGTT
ATCGTTCAGA TAGATAAAGA AGAACGTGGC CAAAAAGGCG CGGCTCTTAC TACCTTTATT
AGTCTTGCTG GTAGTTATTT AGTATTAATG CCAAACAACC CACGTGCTGG TGGTATTTCA
CGTCGTATTG AAGGTGATGA ACGCACCGAG TTAAAAGCTT CGTTGAGCAA ACTAGATTTA
CCTAAAGGCA TGGGCTTAAT TGTAAGAACT GCTGGCGTAG GTAAAGATTA CGAAGAATTA
AAATGGGATC TTAGTGTCCT TTTACATCAC TGGCAAGCGA TTAGTGATGC AGGCAAAAGT
CGCCCTGCTC CTTTCTTAAT TCATCAAGAA ACCAACCTGA TTTTACGTGC TATTCGTGAC
TATTTACGTC GTGATATTGG TGAAGTATTA ATTGATCGTC CTAAAACGTT TGAAAGTGTT
AAAAAACACA TTGAGGTCGT TCGTCCTGAC TTCTTAAATA AAATAAAGCT ATATACCAGT
GATGTACCTT TATTTACGCA TTATCAAATT GAAACTCAAA TAGAAACGGC CTTCCAACGT
GAAGTACGCT TACCTTCTGG CGGATCAATT GTTATTGACC CTACTGAAGC AATGACTTCT
ATAGATATTA ACTCAGCACG TGCAACTAAA GGTAGTGACA TTGAAGAAAC TGCCTTTAAT
ACCAATTTAG AAGCTGCTGA AGAGATTGCT CGTCAACTTC GCTTACGTGA TTTAGGTGGC
TTGGTTGTTA TTGACTTTAT CGATATGACA CCTGTTCGTC ATCAACGTGA AGTAGAAAAT
AGAATGCGTG ATTCAGTTCA TCAAGATAGA GCACGTATTC AGCTTGGTAA AATCTCTCGC
TTTGGTTTAT TAGAGATGTC TCGCCAACGT TTACGTCCTT CAATTGGTGA AACAAGCCAA
GGTGTATGTC CTCGTTGTAG TGGTACAGGT CATGTTCGTG GTGTTGAATC TTTAGCGTTA
TCTATATTAC GATTAATGGA AGAAGAAGCG ATAAAGGAAA ATACGTTACA TGTACAAGCA
CAAGTACCTG TACCTGTTGC AACCTACTTA TTAAATGAGA AACGTCGCTC AGTGATGCAT
GTTGAAAAAC ATCATAATGT AAGAGTTTTG ATCATTCCTA ATCCACATAT GGATACTCCG
CAATACGAAG TTCTGCGTGT TAAAAATGAT GAAACTATCG TAGAAGCAAG TTATGAATTA
CCGGTAAAGA AAGCTGAACT TGAAGAAGCT AAAATGCCTA AGTTTGATAA AGTTGCGGCT
AAACGTGATG AACCTTTGAT TCAAGGTATG ACTTCACCAA CACGTGCTCC TAAAGCCGAT
GAGTCGCCAG TAAAAGCGGA AATAACTACG GTATCCAAAC AAACGAAACC TAGTGGATTC
TTTGGTTGGT TAAAGAGCCT CTTTGTTGCT GAAGAAGTGG TTGAAGAAGT TAAAGAAGTA
AGTACTACTC AACAACCTAA AAAACCACAA GAAAGACGTG GAAACCAGCA AGCTAAGCGT
CGCAACAATC GTGGCAATAA CCGTAACCGT AACGATCGTA ATGGCGAAGA TGCTACTAAT
CGTCCTATTC AAAAAGAAAA TGAAGCAAGA GATACTCGTC CTAGTCGCGA TGAAGAAGTC
AATAAACCTA AGAGACAGCC TCGTAAAACT ATCGCTGTTG ATAAAGAAAA AGTTGTTAAA
GAAGAGAAGA ATACTGAACG TCGTCAACGT AGGAACAATC GTAAAAAAAT ACGTGTAACA
CCGACAGATA AAGTCATCGA AACAACTGAA AAATTAGCTG TAGTTAGTAC CCCTGAAATT
GAACAGGTTA ATACTCCTGC TGTTGAGAAT GTAGAGGTTG TAGCAACTAA CGATGATAAA
CCACGTAATA GACGTTCTCC AAGACACTTA AGAGCAAATG GTCAACGTCG TCGTCGTAAC
AATGCTGAAA ATAATTCTGA AGCTACACAA CAGGATCAGG CATTAACGAC TGAAAATATA
ACTACCGATG AGTCAGTAGA AGCACGTTAT CCTGCAACTT CTGTTACTGA ACAAGAAGTA
GTGGTTACTT CAACTGAAGA AGTTGCGGTT GAAACAATTG CAGCAGCACC TGTTGAAACT
AAAGCAGTTG AAACTGAAGC AGTTGAAACG GTTATTGATG TGCCGTTAAA TGACACCAAA
GAGCTTGATA CAACGAAAAC TGAAGAAGAA GTTTCCACAG CAGATGTTGC TGAGCAAGTG
ACTGAAGTTC AGCAAGAGTT GCCGTTAGAG CAAAAACAAG ACGTTGTTGT AACGACAGAA
GAATCTCCTG AAGTAAAAGA GGCGAATGCC GCCGCTCCAG TTGAAACGGA TGTTACAAGT
CCAGCTATTG AAACTGTTAA GCAAGAAACA GTAAATGATA CTGCACCAGT TGCTAAAAGC
GTTGAAGTTG CGGAAACTGT TATTGCAACG CAAGAAGATA AAGTTGTAGC TCCTAAGCCT
GCTAAGAAAG CATCCTCTGC AGTCAAGAAA GCCGCACCTA AAGATAAAAA GTTAGCAAGA
CAAGTTAAAA AAGCTAACCG TCTATCTGGC CATGCAAAAG CACCAATGAC TAAAACAGAA
ACAATCACGA CTATTAAAGA TATACCAACA AACTTTATGG CTGACAGTGA ACGACATGTT
CATCAGTCGT CAGGTAGAAC AGCTATTATT GCTGATGTGG TAAATCGTAG TAGTGCGCAG
GCAACTAAGC CATAG
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| Protein sequence | MKRMLINATQ SEELRVALVD GQKLYDLDIE SPGHEQKKSN IYKAKITRIE PSLEAAFVDY
GADRHGFLPM KEIAREYFPK GYTFQGRPNI KEVLHEGQEV IVQIDKEERG QKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKASLSKLDL PKGMGLIVRT AGVGKDYEEL
KWDLSVLLHH WQAISDAGKS RPAPFLIHQE TNLILRAIRD YLRRDIGEVL IDRPKTFESV
KKHIEVVRPD FLNKIKLYTS DVPLFTHYQI ETQIETAFQR EVRLPSGGSI VIDPTEAMTS
IDINSARATK GSDIEETAFN TNLEAAEEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RMRDSVHQDR ARIQLGKISR FGLLEMSRQR LRPSIGETSQ GVCPRCSGTG HVRGVESLAL
SILRLMEEEA IKENTLHVQA QVPVPVATYL LNEKRRSVMH VEKHHNVRVL IIPNPHMDTP
QYEVLRVKND ETIVEASYEL PVKKAELEEA KMPKFDKVAA KRDEPLIQGM TSPTRAPKAD
ESPVKAEITT VSKQTKPSGF FGWLKSLFVA EEVVEEVKEV STTQQPKKPQ ERRGNQQAKR
RNNRGNNRNR NDRNGEDATN RPIQKENEAR DTRPSRDEEV NKPKRQPRKT IAVDKEKVVK
EEKNTERRQR RNNRKKIRVT PTDKVIETTE KLAVVSTPEI EQVNTPAVEN VEVVATNDDK
PRNRRSPRHL RANGQRRRRN NAENNSEATQ QDQALTTENI TTDESVEARY PATSVTEQEV
VVTSTEEVAV ETIAAAPVET KAVETEAVET VIDVPLNDTK ELDTTKTEEE VSTADVAEQV
TEVQQELPLE QKQDVVVTTE ESPEVKEANA AAPVETDVTS PAIETVKQET VNDTAPVAKS
VEVAETVIAT QEDKVVAPKP AKKASSAVKK AAPKDKKLAR QVKKANRLSG HAKAPMTKTE
TITTIKDIPT NFMADSERHV HQSSGRTAII ADVVNRSSAQ ATKP
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