Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2243 |
Symbol | |
ID | 3518699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 2343055 |
End bp | 2347182 |
Gene Length | 4128 bp |
Protein Length | 1375 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637284700 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_268968 |
Protein GI | 71278677 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCTGTTT CGATTAAGTC TGTTATTACT TCATTTTCCC ATTTACAAAA ACTTTTTGAA TTATTGCCAC AAGCAAAAAA AAGCGATGCT GTACGCTTTA GAAAAAGGTT AATAAATCTG AAAAAAACGA TTACTAAAGA GGTTGGACAA AAATCACCGA CTGAATTGGC GATGCTATCA TTATCAGAAA AGCACATTAA GTTGGTCGAA CCGTTACAAC AACATATCCT CAGATCTATT CAAGATAAAC AACAAAAAAT CAGAAGTTTA CCTAAAATAA CGTATCCCGA AGGTTTACCC ATTTCAGAGA ATGCTGCGCA AATTTCAGCA GCTATTGATG CTAATCAAGT GGTTATCATT GCGGGTGAAA CAGGATCTGG AAAAACTACA CAAATTCCCA AGATTTGTCT TGAACTTGGT CGAGGTGTGG ATGGTCTTAT TGGTCACACT CAACCTAGAC GTATTGCCGC TAGAACCGTT GCTAATCGTA TTGCGGAAGA GTTAGGCACT AAGTTAGGTG AGCAAGTAGG TTATAAGGTT CGTTTTAATG ACCAAGTCAG CGAGCAAAGT TATATCAAAT TGATGACTGA CGGTATTTTG CTGGCGGAAA TGCAAAGGGA TAGATTACTT CTTAAATACG ACACAATTAT CATCGATGAA GCCCATGAGC GTAGTTTAAA TATCGATTTT ATTTTGGGCT ATTTAAAGCA AATACTAATA AAACGACCTG ATCTAAAGTT AATCATTACC TCAGCGACCA TTGACCCACA ACGTTTTGCG AAACATTTCT CTAGTAAGAA TGGCTTACCA GCACCTATTA TTGAAGTATC AGGAAGAACA TTCCCTGTTG AAATGCGCTA TCGACCATTA AATGATCGTG CAGTGATTGA TGATGACGAC CAATCACCGC AAGAAGTTGA TATTATCAGT GGTATTTTGT CGGCGGTTGA TGAGCTAAGT GACTGCGGTA ATGGTGACAT TCTGGTTTTC CTCAATGGTG AACGGGAAAT ACGCGATACT GCTGCTGCGC TAGTTAAAGC TAATTTACGT CATACTAATG TTTTGCCTCT GTATGCTCGT TTAACGGTTA GTGAGCAGAA TCAAATATTT AAACCCCACA GTGGACGAAA TATTGTATTG GCAACCAACG TTGCTGAAAC GAGCTTAACA GTACCAGGTA TCAAGTATGT GATTGATCCG GGAACGGCAC GTATTTCACG TTACAGTTAC CGAACTAAAG TACAACGTTT GCCTATTGAA CCAGTTTCAC AGGCAAGTGC TAATCAACGC TCTGGCCGTT GTGGACGTGT TTCTGAAGGT ATCTGTATTC GTTTATATTC AGAAGATGAT TATAAAAGTC GTGCTGAATT TACAGACCCT GAAATTTTAC GTACCAATTT AGCAACCGTC ATATTGCAAA TGCATGCGCT GGATTTAGGT GATATTGCTA ATTTTCCGTT TGTTGAAGCC CCTGATAATC GTAATATCAC TGACGGTGTT CGTTTATTGG AAGAAATTGC TGCGGTTGAA AGCATAGAAA ACGCGGATAA AAACGCTAAG GGTAAAGCTT CGTCAACGGC GACACAGTTG ACGAAATCAG GCCGTCTATT AGCAAAGTTC CCTATAGATC CTCGTTTGGC AAAAATGGTC GTCTCTTCCA TAGAATTTGG TTGTATCGAA CAAATACTGA TTATTGTTAG TGCATTAAGT ATTCAAGATC CACGAGAAAG ACCGCATGAG AAACAACAGC TGAGTGATGA AAAGCATAAC CGATTTAAAG ATAAGTCATC TGATTTTATA AGCTTACTTA ATCTTTGGCA GTATATTAAC GAGCAGAAAA AAGACTTAAC GCAAAATCAG TTTAGGAAGT TATGTCAGCG CGAGTTTCTT TCTTATGTTC GTTTACGTGA ATGGCAAGAT ATTTTCAGTC AATTAAAACT AACGTTAAAA GAACAGCAAA TAACGTTAAC GTCGATTGAT TATCAGTTTT CTATGCCGAA TGTTCAGCAG GGTCAAGCAG CAAGCACAGC AGTAGATAAG ACAAAAGAGA CAGAGCAAGA CTCAGCGTTA ACTCCTGTAC ATCAAGCATT GTTGTCAGGT TTACTTAGTC ATATCGGTCA ACAGGATGAA AACCGCGAGT ATAAAGGAGC TCGGGGAATG AAGTTTTTTA TCTTTCCAGG CTCAGCGCTA ACTAAAAAAT CACCAAAATG GTTAATGTCT GCGGAGCTAG TAGAAACCAG TCGATTGTTT GCTCGTATGA ATGCCAAGAT TGACCCTTTG TGGCTGGAAC CGCTTGCTCA GCATTTAGTT AAGCGAAATT ACAGTGAACC TCATTGGGAG AAAAAACAAG GTGCTGTAAT GGCCTTTGAG CAAGTAACAT TGTATGGCTT AAGTATTGTT AGTAAACGTA AGATCAATTT TAATGTCATT GAACCGGTTA CTTGTCGTGA AATATTTATT CGTGAAGCAT TGGTCAATGG TGACTGCGTC ATTAAAGAAA AGTTTTTAAG CAAAAACCAG CAATTGGTCG AAAGCATAGA AGAGCTTGAA CAAAAAGCAC GTCGCAGAGA CTTTTTAATT GATGAACAGC ATTTAGTTGA TTTTTACAGT GATAAACTTC CTGATACTGT TAACTGTCAA CGTAGCTTCC TCGCTTGGTG GAAAAAAGCT AAACGTGAGA ACGAACAGTT ATTAGATTTT AGCAAAGCCT TTTTATTGAA TGAGTCTTCG GATGAATTAA GTACTATTGA GTACCCTGAC GTTTGGCAAC AAGATAGTAT TACCCTACCG CTAACATATC ATTTTAGTCC TGGTGATATT GATGATGGCA TCAGTGTTGT ATTGCCGATT GCCTTATTAA ATCAAGTGCA AGAGGTTGGG TTTGATTGGC TGATCCCTGC ACTGCGAGAT GAGCTTGCCA TCGCACTAAT TAAAGCTTTG CCTAAAACAT TAAGACGTAA TTTTGTTCCC GCACCTAATT ATGCACAAGC TTGTTTAGCA GCTATGCCTG CTGAGCAGGG ACATTTACAA GATGCGCTAG CAAAACAATT GTTACGAATG ACTGGGGTAC GATTACCTGA AGATGCTTGG CAGGATATTA CCTTACCAAT TCACTTAACC ATGAATTTTC AAGTAGTCGA TGACAAAGGG AAGTTAATAA AGCAAGGCAG AGACCTCAAC GAACTTAAAG CTGAACTGCA AGGTAAAGTA AAAGCATCGA TTAAACAGGT TGCAGAAAAG GGCATTGAGC AAGCTGATTT AACGAAATGG GATTTTGGTT CACTACCTAA AGGTTATGAA AAGAAAGTTG CCAACATCAC TATTAAGGCA TTTCCTGCAT TGGTTGATCA TAAAAATAGT GTTGCTATCG AGCTTTTTGA GCAAGAACAA CATGCCCAAG AAGCTATGCT GAAAGGGATT AGCCGACTTA TCTTATTGAA TATCCCAACA CCATTAAAAT ATTTACAGGA AAAACTACCG AATAAAGCCA AATTGGGTTT GTACTTTAAT CCTTTTGGTT CAATCAATGA GTTATTACAA GACTGTATTC AAGGTGCTTG TTTGTCTTTG GTTCAACAAT TTTCTCAACA CCAAAATAAT GGACTGCTTC CTAGGGAAGA AAAGCAATTT GCGAAGTGTT GTGATTATGT TAGAGCTGAA ATAGCCGATT GTGTGTTAAC TGCAGCCATT AAAGTCGAGC GTGCATTAAC GTTGCGTCAT GAAGTGACTA AAAAAATGAA AGGCAGTGTG CCTTTAAATG TTATTCAATC TCATGGTGAT ATAAAACAAC AATGCGAGCA GTTAGTATTC AAAGGGTTTG TAACTTACTC AGGTTTGAGC AAACTAGATG ATATTATTCG ATATTTACAA GGCATGTTAC GCCGTTTAGA AAAACTGCCA AGTGACCCTA ATCAAGATAG ATTAAAGCTT ATTGAGGTAT CTAAAGTTAA CGATATGTAT CAAGTGATTA TGAGCAAGCA ACGTAAGGAT AAACCAGTAG ACAATGAGTT ACTGGCTACC CGATGGTTGA TTGAAGAGCT AAGGATTTCA TTGTTTGCAC AAAATTTAGG TACCTCAGCG CCAATATCAG TTAAGCGTAT TTTAAATTAT TTAAAAGGTT TTTCTTAA
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Protein sequence | MSVSIKSVIT SFSHLQKLFE LLPQAKKSDA VRFRKRLINL KKTITKEVGQ KSPTELAMLS LSEKHIKLVE PLQQHILRSI QDKQQKIRSL PKITYPEGLP ISENAAQISA AIDANQVVII AGETGSGKTT QIPKICLELG RGVDGLIGHT QPRRIAARTV ANRIAEELGT KLGEQVGYKV RFNDQVSEQS YIKLMTDGIL LAEMQRDRLL LKYDTIIIDE AHERSLNIDF ILGYLKQILI KRPDLKLIIT SATIDPQRFA KHFSSKNGLP APIIEVSGRT FPVEMRYRPL NDRAVIDDDD QSPQEVDIIS GILSAVDELS DCGNGDILVF LNGEREIRDT AAALVKANLR HTNVLPLYAR LTVSEQNQIF KPHSGRNIVL ATNVAETSLT VPGIKYVIDP GTARISRYSY RTKVQRLPIE PVSQASANQR SGRCGRVSEG ICIRLYSEDD YKSRAEFTDP EILRTNLATV ILQMHALDLG DIANFPFVEA PDNRNITDGV RLLEEIAAVE SIENADKNAK GKASSTATQL TKSGRLLAKF PIDPRLAKMV VSSIEFGCIE QILIIVSALS IQDPRERPHE KQQLSDEKHN RFKDKSSDFI SLLNLWQYIN EQKKDLTQNQ FRKLCQREFL SYVRLREWQD IFSQLKLTLK EQQITLTSID YQFSMPNVQQ GQAASTAVDK TKETEQDSAL TPVHQALLSG LLSHIGQQDE NREYKGARGM KFFIFPGSAL TKKSPKWLMS AELVETSRLF ARMNAKIDPL WLEPLAQHLV KRNYSEPHWE KKQGAVMAFE QVTLYGLSIV SKRKINFNVI EPVTCREIFI REALVNGDCV IKEKFLSKNQ QLVESIEELE QKARRRDFLI DEQHLVDFYS DKLPDTVNCQ RSFLAWWKKA KRENEQLLDF SKAFLLNESS DELSTIEYPD VWQQDSITLP LTYHFSPGDI DDGISVVLPI ALLNQVQEVG FDWLIPALRD ELAIALIKAL PKTLRRNFVP APNYAQACLA AMPAEQGHLQ DALAKQLLRM TGVRLPEDAW QDITLPIHLT MNFQVVDDKG KLIKQGRDLN ELKAELQGKV KASIKQVAEK GIEQADLTKW DFGSLPKGYE KKVANITIKA FPALVDHKNS VAIELFEQEQ HAQEAMLKGI SRLILLNIPT PLKYLQEKLP NKAKLGLYFN PFGSINELLQ DCIQGACLSL VQQFSQHQNN GLLPREEKQF AKCCDYVRAE IADCVLTAAI KVERALTLRH EVTKKMKGSV PLNVIQSHGD IKQQCEQLVF KGFVTYSGLS KLDDIIRYLQ GMLRRLEKLP SDPNQDRLKL IEVSKVNDMY QVIMSKQRKD KPVDNELLAT RWLIEELRIS LFAQNLGTSA PISVKRILNY LKGFS
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