| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2222 |
|---|
| Symbol | sucD |
|---|
| ID | 3521867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2325323 |
|---|
| End bp | 2326195 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637284679 |
|---|
| Product | succinyl-CoA synthase, alpha subunit |
|---|
| Protein accession | YP_268947 |
|---|
| Protein GI | 71281395 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0851667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAT TAATTAATAA AGATACTAAA GTTATCTGTC AAGGTTTCAC TGGTGGTCAA
GGTACTTTCC ATTCAGAACA AGCTATTGAT TACGGTACAC AAATGGTTGG TGGCGTAAGC
CCAGGTAAAG GCGGTCAAAC GCATTTAGGC CTTCCAGTAT TTAACACAGT ACGTGATGCT
GTAGAAGCAA CTGGCGCAAC AGCAACAGTT ATCTACGTTC CAGCTCCATT CTGTAAAGAT
GCTATTTTAG AAGCTATCGA TGCTGGCATC GAGCTTATCG TAACTATTAC TGAAGGTATT
CCAACTTTAG ATATGGTTGA CGTTAAAGCT AAGCTTACTC AAACTGGCGT TCGTATGATC
GGTCCTAACT GTCCAGGTGT TATTACTCCT GGCGAAACTA AGATTGGTAT CATGCCTGGT
CACATCCATT TACCAGGTAA AGTTGGTATT GTTTCACGTT CAGGTACGTT AACGTACGAA
GCCGTTAAAC AAACAACTGA TGCTGGTTTT GGCCAATCTA CTTGTGTAGG TATTGGTGGC
GACCCTATCC CAGGTACTAA CTTCATCGAC GTATTGGAAA TGTTCCAAAA CGATCCACAA
ACTGAAGCAA TCGTAATGAT TGGTGAAATT GGCGGAACTG CTGAAGAAGA AGCTGCGGAA
TATATCAAAG CTAACGTTAC TAAACCTGTA GTATCTTACA TTGCTGGTGT TACTGCACCA
GAAGGTAAGC GTATGGGTCA CGCTGGCGCG ATTATCGCCG GTGGTAAAGG TACAGCTGAT
GAGAAATTTG CAGCACTAGA AGCGGCCGGT GTTAAAACTG TTCGTTCTTT AGCTGATATC
GGCGTAGCAC TTAAAGAGAA AACAGGTTGG TAG
|
|---|
| Protein sequence | MSVLINKDTK VICQGFTGGQ GTFHSEQAID YGTQMVGGVS PGKGGQTHLG LPVFNTVRDA
VEATGATATV IYVPAPFCKD AILEAIDAGI ELIVTITEGI PTLDMVDVKA KLTQTGVRMI
GPNCPGVITP GETKIGIMPG HIHLPGKVGI VSRSGTLTYE AVKQTTDAGF GQSTCVGIGG
DPIPGTNFID VLEMFQNDPQ TEAIVMIGEI GGTAEEEAAE YIKANVTKPV VSYIAGVTAP
EGKRMGHAGA IIAGGKGTAD EKFAALEAAG VKTVRSLADI GVALKEKTGW
|
|---|
| |