| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2211 |
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| Symbol | |
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| ID | 3521890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2311400 |
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| End bp | 2313109 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637284668 |
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| Product | putative selenocysteine lyase |
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| Protein accession | YP_268936 |
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| Protein GI | 71281418 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0520] Selenocysteine lyase
[COG2166] SufE protein probably involved in Fe-S center assembly |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.686434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTT TTTCACCCCA CTTATTTCGT CAACAATTTC CGCTGATAGA AAGTCATGAT
CAATCATTAA TTGAAAAAGA TGATTTAATG CCATCTTTGA TTTACTTCGA TAATGCGGCG
ACTACGCAAA AACCAAGACA AGTAATCGAT TGTCAGCAAC ATTATTACCG TAATTTTAAT
GCTAATGTTC ACAGAGCTTC TCATCAGCTA AGTAGCAAAG CAACGTTTGC TTTTGAAAAA
GCCCGTAGCT TGGTTCAAGG ATTCATCGGG GCTAAAAGTG TTAAAGAAGT TATCTGGACG
AAAGGTGCAA CTGAAAGCAT AAATGTCGTC GTACAAAGTT TAGCGAGAAA TATTTTAATA
CCTGGAGACG AGATAGCTAT TTGCGTTAGC GAACATCACG CAAACATTGT ACCTTGGCAA
ATTGTTGCAG AACAAACAGG CGCTGTAATC AAAGTCATAC CTATCACTGA ATCTGGATAT
ATCGATGTTG ATGAAATAGA TAATATTATC AGTGATAAAA CCAAATTTGT AGCCTGCGCC
CATATCTCTA ATGTGTTGGG GCGAATAAAT CCTATTGAAC AAGTGATAGT TAAAGCAAAA
TCTGTTGGCG CCATTACTGT GATAGATGGT ACCCAGGCTG TAGCTCATTT TTCTGTAAAC
GTACAGTCAC TCGATTGTGA TTTCTATGTT TTCTCAGCGC ATAAAATGTA CGGTCCAACA
GGTATTGGTG TACTTTATGG TAAAAAGAAG CACCTAGAAA GCATGGCTCC CTATCAAGGG
GGAGGGGAAA TGATTAAAAC GGTGAGTTTT ACTCAAGGAA CAACATTTAA CTCATTGCCC
TTTAAGTTTG AAGCGGGCAC TCCAAATATT GCAGGTGTCA TTGCTTTTGC TGAGAGTATT
AAGTTTCTTG GCCCTTTGTT AACTGATGTT AGTAATAGCT ATGGCTTATT TGAACAAAAG
CTGGTTAATT ATTGTTATCA AGCGTTAGAT AAAATTGCGC AAGTTAACTT TATAGTTGAA
GGGACCCCTG ATATTGGCGT TATCGCTTTT ACCTTAACAG GGCACCATAA TCATGATATC
GCCATGTCTC TCGATACGCA TGGTATTGCT ATTCGCTCAG GCCACCATTG TGCAATGCCG
TTAATGGCTT ATTTGAAAAT TGATGGTTGC TTAAGAGTCT CACTCGCTCC CTACAATACT
GTCACAGAAA TTGACTATTT CATTGATTGT TTAAAAAACA TATTATTGGA AGAAACTATC
GAACAATCAA ACTCACGAGT GAAAGAAGAT GTATTACTAG ACTCACCCGT GAAAGAGATA
GATGAAATTA TTACTCTTTT TTCAAGAACA AAAGGCTGGG ATACCCGACA TAGAGAAATT
ATGTTGCTAG GTAAAAATCT TCCACGTTTA GATAAAGCAT CACGTGATGA CAATACATTG
ATAGCAGGTT GTGAAAGCCT TGCTTGGATT AAAGCTGAAC ACAGCGCTCA AGGTTTGTAT
TCGTTTACTG CAGATAGTGA TGCAAAAATA ATTCGTGGTT TATTAGTGAT TGTACTCGCT
GCTTTTAATC ATCAAACGGC GCAAGAAATA CACCAATTTA ATATTAATGA TTATTTTGAA
AAATTAGGTT TAATGCAACA CTTAAGCCCT TCACGCGGTA ATGGTGTATT GGCTATCGTT
GAAAAAATTA AAGCAATGGC ACAGCAATAA
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| Protein sequence | MNIFSPHLFR QQFPLIESHD QSLIEKDDLM PSLIYFDNAA TTQKPRQVID CQQHYYRNFN
ANVHRASHQL SSKATFAFEK ARSLVQGFIG AKSVKEVIWT KGATESINVV VQSLARNILI
PGDEIAICVS EHHANIVPWQ IVAEQTGAVI KVIPITESGY IDVDEIDNII SDKTKFVACA
HISNVLGRIN PIEQVIVKAK SVGAITVIDG TQAVAHFSVN VQSLDCDFYV FSAHKMYGPT
GIGVLYGKKK HLESMAPYQG GGEMIKTVSF TQGTTFNSLP FKFEAGTPNI AGVIAFAESI
KFLGPLLTDV SNSYGLFEQK LVNYCYQALD KIAQVNFIVE GTPDIGVIAF TLTGHHNHDI
AMSLDTHGIA IRSGHHCAMP LMAYLKIDGC LRVSLAPYNT VTEIDYFIDC LKNILLEETI
EQSNSRVKED VLLDSPVKEI DEIITLFSRT KGWDTRHREI MLLGKNLPRL DKASRDDNTL
IAGCESLAWI KAEHSAQGLY SFTADSDAKI IRGLLVIVLA AFNHQTAQEI HQFNINDYFE
KLGLMQHLSP SRGNGVLAIV EKIKAMAQQ
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