| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2200 |
|---|
| Symbol | |
|---|
| ID | 3522393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2296303 |
|---|
| End bp | 2298207 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637284657 |
|---|
| Product | GGDEF/EAL domain-containing protein |
|---|
| Protein accession | YP_268925 |
|---|
| Protein GI | 71281921 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGT TTTCTAAGTT ATTTATCAAA AATATATTGT TTGCGTTAGT TTTCATAGTC
GCTTTAGGTG GCATTGCATT TTTCTTGCTT TCCACTTATG TGAATCAGCA AACGCTATCG
CAACAAAAAA CCATTCAAAC TATTAGTCAA CAATTTGTTG CCGATGATAT TCCTGCACAA
GAGATCGCTA CTACGTTGTC GGCTGTTTTA AAGGCCAGTG ACGATTACCA AACCTTAATT
ATTAAACGTG ATTCTCTAAT ACTCGTTAAT TATCAAAATA ATTATATTCA TCCTCTCGAT
TCTTTTTTAG CACAACGTAA AACAGTCTCG GTAAGTGAGC TTAATTTACA AGTTCAATAC
CAATTAGATT TTATCGGAAT AATTAATTTT TTAACGCAAC TGTTTATCGG TGTTATTGCG
TTATCAATTA TATTTGTTTT TATTTCAGCA AGATTGAATT ATAAATTACA ATTAACTATT
TTTAGTGTGA TCAGCAAGCA AATTGGTAAT GAACTAGCAA AAATTAATAA TGCCGATTTC
ATTACCAAGG AACAGGATAA TCAACAACTA CTTGAGATTC CTGCTTTAGA AGAAGGTATT
GCCGAAATCA AGACAATGAT GACAGAGCAA TTTAATAATA CAACCAATCT AGAAATAGAA
GCCCATGTAG ACAGCTTAAC GGGCATTGAA AATCGAAATC GATTTGTCCA ATTTTATGAA
AACGAAATTG TAAATGACAG CCCGGTTAAT TTTGGTGTTC TTCTAATTAC TCGTTGCTCT
GAGTTACAGA CCATTAATCA AATCCACGGT TATAGCTCAG GTGACAATTA TATTGTAAGA
GTGGCCGAGA TAATAAAAAC GGCTTTGATT TCAAGACCTA CGGGGAAGAT TTTTCGTCTC
AACAGTTCCG ATTTTGCCAC TATATTACCT AACGTGAAGC TAAAGCTAGC TGAAGACTAT
GCCAGTGAGT TAACAATTAA GTTTAATGAC TATCAGCAAG TCAATGAATT AGATTCTGTA
GCCTTCACAG GCTTAGTCTA TTTTGATAAA TCCAAGCCAT TAGGTGAATT ATTAGCGCTA
GCCGATACCG GAGTCAGTGT TGCTCAAACA CAAAAAGTAA ATTCATGGTA TTCGCAAAAA
GATATTGATA TTTTAAATGA TAGCAGCGCA AACTATGGCA ATCAAAACTG GCGACAAGAG
ATAGATAGTG TATTAGGTGC TGGTCGCATC AGCTTATTAT TACAGCCAAT CCAACCAAGT
GGTCGTAATA CTCGCGTTTA TGGAGAAATA TTAGCGCGTT TCCTTAACGC TAACAATAAC
ATGTTACCTA CAGCAACATT TATTGCTATG GCAGAAAAAC TAGACAAGAT AACCGATGTA
GACCGACTTA TCATAGACAC GGCCATTAAA GAGATAACCA GCAAAAATAT GCTCGACAGT
AGCTATGGTA TTAATATTAG TCCTCGGAGT ATTAACAATG AGCACTTTAT GATCTGGCTA
GAGCGTAAGT TATTGCGCGA ACCAAGTGCA GCCTCTCGAT TAGTGTTTGA AATATCAGAA
CTAGGTCTTC AACAAAATAT TAAAACGGCT AAACGCCTAG TTGACATGCT ACACCGTGTA
GGCTCAAGAG TGACTGTAGA GCGATTTGGT GTAGGCTTGA CTTCATTTAA GTTCTTCAGA
GATTTAACAC CTGACTACAT TAAAATGGAT AGTTCTTATA CTCGTGATAT TGACGATGAT
AAGAACAATC AATACTTCTT ACGCTTAATG GTAGATTTAG CTCACAGACT TGGCATTAGC
GTATTAGCTG AAAGTGTCGA AAGCCAAGAA GAAAAGCACA CATTAGAAAA ACTCTTTATC
GATGGTTGTC AGGGCTATTA TGTTGGAAAA CCTGCACAAT TATAA
|
|---|
| Protein sequence | MYKFSKLFIK NILFALVFIV ALGGIAFFLL STYVNQQTLS QQKTIQTISQ QFVADDIPAQ
EIATTLSAVL KASDDYQTLI IKRDSLILVN YQNNYIHPLD SFLAQRKTVS VSELNLQVQY
QLDFIGIINF LTQLFIGVIA LSIIFVFISA RLNYKLQLTI FSVISKQIGN ELAKINNADF
ITKEQDNQQL LEIPALEEGI AEIKTMMTEQ FNNTTNLEIE AHVDSLTGIE NRNRFVQFYE
NEIVNDSPVN FGVLLITRCS ELQTINQIHG YSSGDNYIVR VAEIIKTALI SRPTGKIFRL
NSSDFATILP NVKLKLAEDY ASELTIKFND YQQVNELDSV AFTGLVYFDK SKPLGELLAL
ADTGVSVAQT QKVNSWYSQK DIDILNDSSA NYGNQNWRQE IDSVLGAGRI SLLLQPIQPS
GRNTRVYGEI LARFLNANNN MLPTATFIAM AEKLDKITDV DRLIIDTAIK EITSKNMLDS
SYGINISPRS INNEHFMIWL ERKLLREPSA ASRLVFEISE LGLQQNIKTA KRLVDMLHRV
GSRVTVERFG VGLTSFKFFR DLTPDYIKMD SSYTRDIDDD KNNQYFLRLM VDLAHRLGIS
VLAESVESQE EKHTLEKLFI DGCQGYYVGK PAQL
|
|---|
| |