| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2152 |
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| Symbol | |
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| ID | 3523091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2254571 |
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| End bp | 2258659 |
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| Gene Length | 4089 bp |
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| Protein Length | 1362 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284609 |
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| Product | thrombospondin type 3 repeat-/CalX-beta domain-containing protein |
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| Protein accession | YP_268877 |
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| Protein GI | 71282616 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTGAAGT ATAAAATATG GTGCTTTAAA TTTTTAAGCA TACTTACCCT TGTCATTAGT
AGCAGTGCTT TTGCCGTAGA TACAGACGGT GATGGCTATG ATGATGCCGT CGATTTATTC
CCTACCGATC CACTTGAATG GATTGACACC GATCTTGATG GCACAGGTAA TAATAGTGAC
CCCGATATTG ATGGCGATGG TTTACTTAAT GGTGATAGTT CACCTTTCGG TAACGATAAC
AATGATGATG GCGATTTAGC CATTAACCTT TATGACCCTT TACCTAAAGA CCCTAGTGAA
TGGCTTGATA CTGATAACGA CGGTCTAGGC AACAACACTG ACACCGATGA TGATAACGAT
GGTGTACCAG ATCTTCTTGA TGTATTTCCA CTTAATTTAC AAGAAAGCTT GGATTCTGAT
CTTGATGGCG TAGGCAATAA TGCTGATGCT GATGATGATG GTGATGGCGT ACTTGATGTT
TATGATCAAT TCCCTTTAGA TCCACTCGAA ACTGTAGATA CCGACCTTGA TGGTATTGGT
AATAATGCTG ATATAGATGA TGACGGTGAT GGTGTCAATG ATGGCAGCGA TGCTTTCCCT
TTAGATTTTA ATGTTAATGC TGATTTAGAT GCAGATGGAA TTGGCAATGC ACAAGACCCT
GATATCGATG GTGATGGTAT TGTAAATACT CTTGATGTTT TCCGTTATGA TTATAGTGAA
TGGTATGACA CCGATGGGGA CATGATAGGT AATAATAAGG ATACCGATGA TGATAACGAT
GGCGTATTAG ATACCCTTGA CGACATGCCT CTTGACCCAT TAGAAATACT AGATACCGAT
AATGATGGCA TAGGCAATAA TGCCGATGAT GATGACGATG GTGATGGTGT TCAAGACAGT
ATTGATATTT TTCCATTAGA TAGCGCGGAA CATCTTGATT TAGATACTGA TGGTATTGGA
GATAATAGCG ATCCTGATAT TGATGGCGAT GGTGAACTAA ATACCAACGA TGCTTTTCCT
TTTCTTGCTA GCGAGCAAAA AGATACTGAC GGAGATGGTT TAGGGGATAA AAGTGATAAT
GATATTGATG GTGATGGCGT AACCAATGGC CCATTCACCT CAGGTAATTA CAATGACCCA
TCAGACACAG TTTTTACTGG TAATGATTTT TTTCCGTTTA CGGCTTCAGA GTATATTGAT
ACGGATGGTA ATGGCGTAGG TAATACGGCT GATCTCGATG ATGACGGTGA TGGTGTTTTA
GATACAGATG ATGTATTTCC TTTAGATAAT ACAGAACAAA AAGATCTTGA TGGCGATGGC
ATTGGTGATA AAGGCGATCC AGATATTGAT GGTGACGGGG TGACGAATGG GAATTTTTCT
TCTGGTAATT ATAGTGACCT TTCAGATCCT GTTTATAGCG GAAATGATGC TTTCCCATTT
ATAATGTTAG CAACAACCGA TACCGATGGT GATCGTCTTC CTAACGAAGG TGGCGATACG
CCTGATGATG ATGATGATGG GGATGTTGAT ATCGGCGGCC TACCTGATGC AACAGATGCT
TTTCCATTAG ATCCTACTGA GTGGTTAGAT TCTGATGGGG ATGGCCTTGG CAATAATGCT
GATAGTGATG ATGATAATGA TGGCATTTCT GATAACGAAG ATGATTTCCC TCTAGATGCC
TCTGAATATT TAAATACTGA TGCTAGCCAC CCAACCAATA GTGATTCAAT CGGTAACAAT
GCTGACACCG ATGATGATGG TGATGGCGTT TTAGATTGCA CAGGAAATGG TTTACTTTGT
GATGCTTACC CGCTAAATGC TAATGAGCAA TATGATAACG ATGGTGATGG CGTTGGCGAT
AATGCTGACA GTGATGATGA TAACGATGGT TTTACTGATG CGATAGATGC CCTCCCTCTA
AACCCTCTAG AATGGTTTGA TACTGACCGA GATGGTACGG GTAATAATGC CGATACCGAT
GATGATGATG ATGGACGCTC AGATAGTATT GATTTATTTC CTCTTGATAA AACTGAATGG
CTTGATGCTG ATAATGACGG CTTAGGTGAT AACAGCGATA GTGATGATGA CAATGATGGC
GTCAGAGATA TTGAAGATGC ATTTCCTAAT AACCCTGTTG AAAGTACTGA TACCGACGGT
GATGGTTTAG GTAATGTTTT TGATAGCAAC GATGATGGTG ATGACTTTTT AGATTTTGAA
GATCAGCTAC CACTAGATGC CACTGAGCAT ATCGATACCG ATGGTGATTC AATTGGTAAT
AATGCTGATT TAGATGATGA TGGCGATGGT ATGAGTGATG AATTCGAACT ATTGCATAAT
TTTGACCCGC TTAATGATGA AGATGGACTA TACGATACTG ACTCTGATGG TGTTACCAAC
GCAGCAGAAG CCTTAGCTGG AAATAATCCA TTACTAGACG ACTATGCGCC TATTATTACG
CCGCCACAGG CTGTACATAT ATATGCCGAT CATACGTTTA CTAAATTGGA ATTAAGTAAG
TTAATTCAAA TGACCAAAGT TTCAGTTACT GATGGAAAAG ATGGTATTAA TTGTTGTAAT
TTAACAGCCT TAGGCTTTGA AACCGGTGCT AAAAATATCA CCTCTGGTTT ATACCCGATA
AAATGGCGAG CTGTTGACAA TGCAGGTAAT AGTGCGACAA CAAATCAAGT ACTTAATGTT
CATCCGTTAG TGAACTTTTC TTCTGCACAA ATTGTTGCTG AAGGTGGGAT TGCTAGGGTA
GAAGTTGTGT TATCCGGTGA AGCACCTGCT TATCCAGTGA CATTACCCCT GACAATCACA
GGTACTGTCG ATAATGCGGA CTACAATATT GCCGATAACA AAATAGTAAT CGCACAGGGT
ACTGCAGGTT TTATCGATAT CAATGTGAAT AATGATTTTC AAGTAGAGGG TGATGAACAA
CTCATTCTTA GCTTTGAACA AGGCGTAAAT GCCGGTGTTC ATGCTGAACA TATCATCACA
GTTACCGAAG GTAATGTTGC GCCAACTATT AATCTAGCAA TTTGGCAAAA AGGCATACAA
GTACCTAGCG TTGCTAGTAA TGATGGTGCA GTGACGGTCG TTTTGAGTAT TAAAGACTCT
AATGTTCAAG ATACTCATCA AATTGACTGG CAAATTCCCG ACTACTTGAA TGCTGTGCTT
TCAACAGATA AATTACAATT TGTCTTTCCA GTTGAAAGTT TGAGCCTACC GAAAGAAAAC
AAGGGCCTGA TTCATCTTAG CGTCACGGTA ACTGACAGCG GTAATAGTAC CAATAGTGGT
ACTGAAGAGT TGTCACAAAC TAAGCAGATT TCTTTAGTTT TATTGGCGAC TCAACAAACA
TTACGTGGCC TAGATAGCGA TAGAGACGGC TTAAGTGATT TGGTTGAAGG TTTTAGTGAT
GACGACTCAG ACGGTTTGCC TGCTTACATG GATAATTCAA CCATCCCTTA TTTACAGCCA
CTACATATTA ATGCGGCTTT AGTAAAATTA GCTGAAACTG AACCTGGGTT ACACTTAAAG
CTAGGTAAGT TTGCGCTGTT ACAAACGTCT GATGGTATAG CGCTTTCGCA ACAAGAAATC
TTGGCTACAG GGTTGATTGA AGAAGACAGT TTAAAGAACT CTTTAGGTTA TTTTGATTTT
GAAATACACA ATATTACCCC TTTTGGTCGC TCTGTTGCCA TTGTGTTGCC TTTGTCTACT
GCTATCGTTG AATACTCTGT TTATCGTAAG GTAAATTCAG AAAATCAATG GGCAGATTTT
GCTGAAGATA GTAACAATGT ACTTTCCACC AGTGCGGCAG TTAATGGCGT TTGTCCGCCA
CCGCACAGTG AGCTTTATCG AGCGGGCCTC AATGTGGGTG ATACCTGTTT AAAGTTATAT
ATTGAAGATG GTGGCGCAAA TGATGCAGAT GGCATTGCTA ACGGGGTCAT TGATGATCCT
GGCGGTATAG CAGTTGACGT TCCCCCTGAA AAATCAAGCA GTGGTAGTTT GTCGTTTTTC
GCTTTGTTCG CACTATTTTT AGTAGTTTTA TCTCGATTAA TGCGCTCAGA ATATTTAGCT
AAAGAATAG
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| Protein sequence | MLKYKIWCFK FLSILTLVIS SSAFAVDTDG DGYDDAVDLF PTDPLEWIDT DLDGTGNNSD
PDIDGDGLLN GDSSPFGNDN NDDGDLAINL YDPLPKDPSE WLDTDNDGLG NNTDTDDDND
GVPDLLDVFP LNLQESLDSD LDGVGNNADA DDDGDGVLDV YDQFPLDPLE TVDTDLDGIG
NNADIDDDGD GVNDGSDAFP LDFNVNADLD ADGIGNAQDP DIDGDGIVNT LDVFRYDYSE
WYDTDGDMIG NNKDTDDDND GVLDTLDDMP LDPLEILDTD NDGIGNNADD DDDGDGVQDS
IDIFPLDSAE HLDLDTDGIG DNSDPDIDGD GELNTNDAFP FLASEQKDTD GDGLGDKSDN
DIDGDGVTNG PFTSGNYNDP SDTVFTGNDF FPFTASEYID TDGNGVGNTA DLDDDGDGVL
DTDDVFPLDN TEQKDLDGDG IGDKGDPDID GDGVTNGNFS SGNYSDLSDP VYSGNDAFPF
IMLATTDTDG DRLPNEGGDT PDDDDDGDVD IGGLPDATDA FPLDPTEWLD SDGDGLGNNA
DSDDDNDGIS DNEDDFPLDA SEYLNTDASH PTNSDSIGNN ADTDDDGDGV LDCTGNGLLC
DAYPLNANEQ YDNDGDGVGD NADSDDDNDG FTDAIDALPL NPLEWFDTDR DGTGNNADTD
DDDDGRSDSI DLFPLDKTEW LDADNDGLGD NSDSDDDNDG VRDIEDAFPN NPVESTDTDG
DGLGNVFDSN DDGDDFLDFE DQLPLDATEH IDTDGDSIGN NADLDDDGDG MSDEFELLHN
FDPLNDEDGL YDTDSDGVTN AAEALAGNNP LLDDYAPIIT PPQAVHIYAD HTFTKLELSK
LIQMTKVSVT DGKDGINCCN LTALGFETGA KNITSGLYPI KWRAVDNAGN SATTNQVLNV
HPLVNFSSAQ IVAEGGIARV EVVLSGEAPA YPVTLPLTIT GTVDNADYNI ADNKIVIAQG
TAGFIDINVN NDFQVEGDEQ LILSFEQGVN AGVHAEHIIT VTEGNVAPTI NLAIWQKGIQ
VPSVASNDGA VTVVLSIKDS NVQDTHQIDW QIPDYLNAVL STDKLQFVFP VESLSLPKEN
KGLIHLSVTV TDSGNSTNSG TEELSQTKQI SLVLLATQQT LRGLDSDRDG LSDLVEGFSD
DDSDGLPAYM DNSTIPYLQP LHINAALVKL AETEPGLHLK LGKFALLQTS DGIALSQQEI
LATGLIEEDS LKNSLGYFDF EIHNITPFGR SVAIVLPLST AIVEYSVYRK VNSENQWADF
AEDSNNVLST SAAVNGVCPP PHSELYRAGL NVGDTCLKLY IEDGGANDAD GIANGVIDDP
GGIAVDVPPE KSSSGSLSFF ALFALFLVVL SRLMRSEYLA KE
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